Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 2135.9 1100 100.0
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2098.6 1100 98.5
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2043.9 1104 95.9
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2035.4 1104 95.5
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1891.7 1104 88.6
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1882.8 1104 88.3
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1633.6 881 95.2
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1563.9 1104 72.6
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1555.0 1108 72.6
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1316.6 1086 62.8
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1304.3 1117 61.8
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1283.5 1068 62.7
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1275.8 1099 60.5
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1273.8 1087 60.7
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1238.8 1102 59.5
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1236.5 1117 59.4
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1213.4 1098 58.5
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1204.1 1073 59.9
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1197.2 1093 57.5
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1196.4 1098 57.6
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1196.0 1095 57.2
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1193.7 1100 56.8
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1189.1 1087 57.8
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1184.9 1098 57.1
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1181.4 1098 57.1
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1168.3 1101 55.9
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1166.8 1093 56.4
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1162.5 1109 56.9
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1152.5 1092 54.7
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1152.1 1090 55.0
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1137.5 1102 55.4
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1135.6 1100 55.2
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1129.0 1093 53.7
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1125.5 1096 54.9
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1109.7 1097 54.4
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1102.4 1100 54.0
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1102.4 1101 54.5
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1100.1 1096 55.4
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1088.9 1037 54.3
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1087.8 1097 53.5
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1087.4 1096 53.7
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 7.5e-312 1074.7 619 89.7
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 1.2e-307 1060.1 1090 51.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 8.5e-306 1053.9 1151 52.4
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 1.9e-305 1052.7 1088 51.5
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 5.5e-305 1051.2 1117 50.1
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 7.2e-305 1050.8 1120 51.1
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 1.0e-303 1047.0 1121 49.1
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 3.0e-303 1045.4 1097 51.3
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 8.8e-303 1043.9 1023 55.0
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 5.7e-302 1041.2 1095 51.5
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.0e-298 1030.4 1088 50.6
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.0e-298 1030.4 1103 49.6
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.3e-298 1030.0 1092 50.8
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 2.9e-298 1028.9 1098 50.7
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 5.5e-297 1024.6 1124 50.4
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 2.2e-293 1012.7 1119 49.6
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 1.4e-292 1010.0 1117 49.6
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.2e-291 1006.9 913 57.3
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 8.8e-287 990.7 1117 47.9
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 1.5e-286 989.9 1104 50.1
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.4e-284 983.4 1064 49.9
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.5e-281 972.6 948 56.5
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 3.6e-280 968.8 964 55.3
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 5.2e-279 964.9 1072 50.1
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.0e-275 953.0 1090 48.6
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.3e-273 945.3 950 55.8
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 4.6e-267 925.2 822 58.9
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.5e-265 920.2 1110 46.5
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.9e-265 919.8 1104 47.2
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 2.5e-265 919.5 1103 47.4
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 3.5e-259 899.0 968 50.8
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 6.6e-258 894.8 1088 45.6
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 2.0e-254 883.2 759 59.6
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 2.2e-253 879.8 1153 44.6
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 6.4e-253 878.2 1114 45.1
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 5.6e-249 865.1 1125 43.9
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 1.1e-244 850.9 893 50.5
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 5.6e-233 812.0 1102 42.4
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 1.7e-229 800.4 961 46.3
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 4.9e-229 798.9 1088 42.0
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 5.9e-206 722.2 733 54.4
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.8e-200 703.4 765 49.3
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 8.2e-200 701.8 792 50.8
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.3e-184 649.0 385 87.0
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 5.0e-173 612.8 1105 35.4
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-172 611.3 925 42.5
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 3.0e-170 603.6 726 47.9
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 9.2e-151 538.9 1141 32.0
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 2.8e-147 527.3 1343 28.7
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 6.2e-147 526.2 701 44.1
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.1e-125 453.4 463 54.4
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.5e-124 451.8 451 56.3
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.0e-104 386.0 339 61.1
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.7e-100 369.4 1224 28.8
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.3e-99 369.0 339 60.2
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.1e-94 351.7 331 57.7
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.7e-92 343.6 339 54.3
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.3e-91 340.1 593 39.1
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.2e-80 305.1 297 54.9
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.0e-77 296.2 298 52.0
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.7e-75 287.7 291 52.6
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 4.0e-69 267.7 277 49.8
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 2.0e-65 255.4 229 61.1
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 6.8e-61 240.4 127 96.9
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.1e-58 229.9 356 38.2
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 3.3e-55 221.5 126 92.1
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-54 219.2 126 91.3
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.6e-54 218.0 126 91.3
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 3.6e-54 218.0 261 49.0
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 1.7e-48 199.1 180 53.3
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.9e-48 198.4 389 36.5
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.7e-43 182.6 204 48.0
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.2e-43 182.2 299 40.5
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 2.0e-41 175.6 194 44.3
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.1e-39 169.9 154 50.6
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.9e-39 169.1 144 55.6
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 3.3e-39 168.3 316 37.0
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 7.3e-39 167.2 138 62.3
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.8e-38 165.2 492 29.3
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 2.2e-35 155.6 460 27.0
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.3e-29 135.6 131 56.5
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 3.2e-18 98.6 153 38.6
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.2e-17 96.7 161 39.1
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.7e-16 90.5 50 92.0
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-15 88.6 232 27.6
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.2e-14 86.7 79 59.5
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.8e-12 77.8 85 44.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 4.9e-11 74.7 62 56.5
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 7.8e-09 67.4 94 39.4
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 7.8e-09 67.4 405 21.5
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 1.0e-08 67.0 118 39.8
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 5.6e-07 61.2 43 67.4


User provided reference genes

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