Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 0.0e+00 1507.7 1029 100.0
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 0.0e+00 1477.6 1029 98.7
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 0.0e+00 1320.1 1029 92.1
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 0.0e+00 1314.3 1029 91.9
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 0.0e+00 1311.2 1029 91.8
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 0.0e+00 1257.7 1042 88.2
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 5.0e-268 928.3 1061 72.2
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 1.9e-243 846.7 1088 67.7
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 2.5e-214 750.0 1154 61.2
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 4.2e-214 749.2 1106 63.1
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 6.9e-209 731.9 1120 62.1
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.7e-205 719.9 1149 55.4
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.4e-204 717.6 1149 56.4
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.5e-192 677.6 1123 59.0
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.6e-184 651.0 1059 59.9
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 3.8e-183 646.4 1088 59.2
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 3.0e-180 636.7 1119 58.4
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.1e-174 618.2 1109 57.0
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.2e-173 614.8 1121 57.1
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 2.7e-173 613.6 1115 56.7
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 4.7e-173 612.8 1105 53.0
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 3.0e-172 610.1 1122 48.9
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 5.7e-171 605.9 1112 52.7
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 3.1e-169 600.1 1116 51.1
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 5.4e-169 599.4 934 58.4
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.5e-168 596.7 1121 56.3
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 7.7e-168 595.5 1127 57.1
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.2e-165 588.2 1109 56.4
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.2e-165 588.2 1139 55.5
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.6e-163 580.5 1059 58.6
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 2.4e-161 573.9 1086 52.7
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.4e-161 572.8 1105 55.9
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 2.0e-160 570.9 1190 49.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 5.9e-160 569.3 925 63.8
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.3e-159 568.2 1099 52.0
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.3e-158 563.5 1099 56.5
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.1e-157 560.8 1112 55.2
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 3.6e-157 560.1 1099 53.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.9e-153 547.7 932 61.3
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 5.4e-153 546.2 1122 55.7
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.6e-152 544.7 930 61.5
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 2.7e-152 543.9 1190 48.2
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 7.8e-152 542.3 951 60.5
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.6e-149 534.6 1102 53.9
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.8e-148 531.2 1079 55.9
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 8.9e-148 528.9 1128 54.3
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.5e-147 528.1 1118 55.0
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 3.4e-147 526.9 1110 53.6
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 7.5e-147 525.8 1079 55.8
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 9.8e-147 525.4 759 69.3
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 2.2e-146 524.2 1096 54.4
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 6.4e-146 522.7 1162 53.6
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 6.4e-146 522.7 1067 55.0
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 2.4e-145 520.8 1163 53.6
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.4e-145 520.8 1132 53.4
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.2e-145 520.4 910 63.4
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 5.4e-145 519.6 1087 54.3
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 7.8e-144 515.8 1078 55.2
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.3e-143 515.0 1087 54.4
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 7.3e-142 509.2 1110 54.1
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.1e-141 507.7 1067 50.0
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 5.2e-140 503.1 1047 56.2
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 3.4e-139 500.4 712 71.9
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 9.9e-139 498.8 845 58.5
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.3e-135 488.4 1101 50.0
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 3.0e-135 487.3 811 60.4
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 3.9e-135 486.9 1147 53.2
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 6.6e-135 486.1 938 55.5
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 3.3e-134 483.8 931 59.6
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.2e-133 481.9 1158 52.9
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 2.1e-133 481.1 500 76.0
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 4.4e-131 473.4 1124 51.8
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 4.4e-131 473.4 1122 53.4
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 4.2e-129 466.8 874 50.2
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.3e-127 461.8 1070 52.4
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.3e-127 461.8 1109 52.5
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 1.3e-125 455.3 1053 53.8
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.6e-125 453.8 743 66.4
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.8e-124 451.4 707 69.7
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 4.0e-124 450.3 1105 53.3
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 5.3e-124 449.9 1069 53.3
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 9.0e-124 449.1 1079 51.4
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 2.0e-123 448.0 1114 50.6
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 3.4e-123 447.2 805 63.5
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.9e-122 444.1 1128 50.1
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 5.4e-121 439.9 878 59.3
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 5.1e-119 433.3 1128 49.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.3e-117 428.7 1127 49.4
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.6e-117 427.2 1077 51.0
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 6.2e-117 426.4 722 63.3
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 8.1e-117 426.0 757 62.1
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 5.8e-115 419.9 1100 49.7
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 1.8e-111 408.3 818 59.9
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 2.6e-107 394.4 712 56.7
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.3e-82 312.4 738 60.7
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.2e-81 307.8 731 49.5
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 3.7e-77 294.3 259 56.0
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.9e-67 260.4 216 63.0
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.2e-51 209.5 694 46.3
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.6e-48 199.1 268 83.2
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 8.0e-48 196.8 705 45.4
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 5.2e-47 194.1 655 46.0
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 1.2e-46 193.0 691 56.3
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.1e-44 186.4 283 39.2
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.4e-44 186.0 247 44.1
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 5.9e-43 180.6 249 41.4
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.6e-40 172.6 123 66.7
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 4.7e-40 171.0 387 55.0
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.3e-39 168.7 315 67.3
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 6.8e-39 167.2 718 41.8
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 4.9e-37 161.0 238 41.2
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.4e-37 160.6 897 45.5
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.0e-35 155.6 305 68.5
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.0e-35 155.6 140 62.1
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.1e-32 145.6 116 65.5
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.1e-31 141.7 108 67.6
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.0e-26 125.2 140 40.7
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 6.6e-26 124.0 127 55.1
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 8.6e-26 123.6 322 30.1
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.3e-25 120.6 238 30.7
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.4e-20 106.3 92 51.1
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.5e-17 95.5 100 73.0
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.6e-14 85.5 244 30.7
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 1.3e-13 83.2 149 38.9
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.9e-10 71.6 76 50.0
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.4e-07 63.2 37 78.4
SEGI_00210 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 7.6e-06 57.4 49 57.1
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 9.9e-06 57.0 38 68.4


User provided reference genes

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