Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.2e-291 1005.0 545 100.0
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.2e-291 1005.0 545 100.0
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.8e-280 968.8 546 97.3
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.0e-280 967.6 546 97.1
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.8e-279 963.0 546 96.7
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 4.7e-257 891.0 548 88.9
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 3.3e-218 761.9 559 76.6
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 3.0e-211 738.8 553 73.2
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.5e-210 735.7 563 74.2
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 3.1e-208 728.8 555 72.8
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 3.1e-208 728.8 549 71.6
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.0e-206 723.8 543 72.4
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 5.0e-206 721.5 563 71.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 3.2e-205 718.8 563 71.2
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 5.1e-203 711.4 553 72.3
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.5e-202 709.1 551 69.9
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.3e-202 708.4 563 72.1
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.3e-201 706.8 566 69.8
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.2e-201 706.1 564 69.7
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 2.4e-200 702.6 550 72.0
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 4.1e-200 701.8 524 74.8
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 4.5e-199 698.4 564 69.7
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 5.9e-199 698.0 555 70.5
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.7e-198 696.4 546 69.6
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 8.5e-198 694.1 564 69.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 1.1e-197 693.7 551 69.0
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.9e-197 693.0 546 69.2
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 4.2e-197 691.8 561 71.8
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 5.5e-197 691.4 552 68.5
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 7.2e-197 691.0 558 69.4
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 2.7e-196 689.1 560 69.8
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 4.7e-196 688.3 541 68.9
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 4.7e-196 688.3 539 69.2
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 1.4e-195 686.8 551 69.3
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.4e-195 686.8 545 69.4
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.8e-195 686.4 561 67.0
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 2.3e-195 686.0 553 68.2
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 3.9e-195 685.3 558 67.6
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 6.7e-195 684.5 555 67.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 6.7e-195 684.5 558 67.4
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 2.6e-194 682.6 532 69.9
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 4.4e-194 681.8 557 65.9
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 7.4e-194 681.0 533 70.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 7.4e-194 681.0 548 68.1
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.3e-193 680.2 543 67.4
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.7e-193 679.9 554 67.3
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.2e-193 679.5 554 67.5
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 2.8e-193 679.1 532 69.5
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 3.7e-193 678.7 545 69.4
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 4.8e-193 678.3 543 68.9
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 4.8e-193 678.3 554 66.6
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.4e-192 676.8 541 68.2
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.4e-192 676.0 552 67.6
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 3.1e-192 675.6 554 67.1
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 4.1e-192 675.2 555 67.9
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.1e-192 675.2 560 69.1
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 9.1e-192 674.1 560 67.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 4.5e-191 671.8 560 66.4
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 4.5e-191 671.8 530 69.2
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 3.8e-190 668.7 558 67.0
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.8e-190 668.7 538 68.2
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 3.8e-190 668.7 544 66.9
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.9e-189 666.4 552 66.5
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.9e-189 666.4 547 66.9
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.5e-189 666.0 532 70.3
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.2e-188 663.7 539 67.7
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.7e-188 662.5 550 65.8
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.4e-187 660.2 558 67.7
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.8e-187 659.8 551 66.6
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.8e-187 659.8 551 66.4
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 3.0e-187 659.1 551 66.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 8.8e-187 657.5 551 65.2
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.5e-186 656.8 555 65.9
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.5e-186 656.8 545 68.1
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 4.4e-186 655.2 548 65.7
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.1e-184 650.6 554 65.2
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.8e-184 649.8 557 64.8
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.8e-184 649.8 565 65.0
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.5e-183 645.6 468 74.4
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.2e-181 639.0 504 67.9
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 5.5e-181 638.3 569 64.3
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.6e-180 636.7 555 64.5
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 4.7e-180 635.2 583 62.4
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 6.1e-180 634.8 576 63.0
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 5.2e-179 631.7 552 63.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 9.7e-178 627.5 556 63.8
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 1.7e-177 626.7 554 63.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.0e-174 617.5 495 66.7
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.7e-174 616.7 609 59.3
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.5e-173 613.6 546 62.8
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 4.2e-173 612.1 574 60.8
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 1.5e-170 603.6 563 61.1
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 6.3e-169 598.2 590 58.8
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 3.8e-166 589.0 536 62.1
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 1.8e-155 553.5 444 67.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.3e-147 526.6 517 61.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 9.8e-146 521.2 595 50.4
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.1e-131 474.6 495 58.6
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 2.0e-130 470.3 533 55.9
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 2.7e-127 459.9 402 65.9
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 1.7e-121 440.7 467 53.3
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 5.1e-118 429.1 349 69.9
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 3.2e-112 409.8 464 53.2
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.6e-111 407.5 354 64.7
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.3e-108 397.9 328 67.1
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.9e-107 392.1 306 68.3
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 9.0e-107 391.7 276 75.0
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 9.9e-106 388.3 306 69.3
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 8.4e-105 385.2 521 44.0
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 3.9e-102 376.3 306 68.0
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.3e-100 371.3 306 67.3
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 2.8e-100 370.2 381 55.9
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.4e-99 367.9 396 55.1
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.1e-93 348.2 349 57.9
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.9e-93 347.4 349 57.9
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.4e-90 336.7 566 39.0
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.7e-89 334.3 583 37.7
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 5.0e-89 332.8 272 69.9
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 3.4e-82 310.1 583 36.5
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 7.2e-72 275.8 173 81.5
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 1.6e-71 274.6 273 60.1
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.7e-49 201.4 185 57.8
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 5.0e-49 199.9 559 30.4
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 8.6e-49 199.1 183 62.3
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 3.6e-47 193.7 258 48.8
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.6e-39 168.3 126 71.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 6.4e-36 156.4 367 27.8
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 9.2e-35 152.5 446 26.9
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.6e-31 141.7 88 83.0
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 8.0e-31 139.4 429 28.2
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.0e-29 134.8 102 69.6
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.6e-26 125.2 86 74.4
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 3.0e-25 120.9 351 27.1
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 9.5e-24 115.9 541 24.2
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.1e-22 110.9 119 50.4
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 5.2e-22 110.2 147 49.0
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.3e-20 105.5 523 26.6
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.3e-17 94.7 443 23.5
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.1e-17 93.6 119 43.7
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 7.6e-13 79.7 110 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 1.9e-11 75.1 228 34.2
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 3.9e-09 67.4 219 26.0
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 7.3e-08 63.2 219 26.5
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 1.3e-07 62.4 338 26.0
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 1.6e-07 62.0 218 25.2
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 2.8e-07 61.2 341 26.1
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 3.6e-07 60.8 218 24.8
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 3.6e-07 60.8 219 24.7
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 4.8e-07 60.5 272 26.8
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 4.8e-07 60.5 217 26.3
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 4.8e-07 60.5 217 26.3
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 6.2e-07 60.1 219 24.7
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 8.1e-07 59.7 219 24.2
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 1.1e-06 59.3 218 28.0
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 1.8e-06 58.5 218 28.0
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.4e-06 58.2 391 22.0
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 2.4e-06 58.2 45 68.9
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 3.1e-06 57.8 219 24.7
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 3.1e-06 57.8 255 22.7
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 3.1e-06 57.8 320 24.4
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 5.3e-06 57.0 217 26.3
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 5.3e-06 57.0 217 26.3
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 5.3e-06 57.0 217 25.3
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 6.9e-06 56.6 240 24.6
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 9.0e-06 56.2 218 23.9
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 9.0e-06 56.2 218 27.1


User provided reference genes

Program Settings