Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 3.0e-168 595.1 310 100.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-167 592.8 310 99.7
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.7e-163 579.3 310 97.7
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.1e-160 568.5 310 96.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.3e-138 495.0 320 83.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.4e-104 382.9 341 64.2
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.3e-91 339.7 343 59.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.3e-90 335.9 358 57.8
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 3.9e-83 312.4 339 55.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.0e-82 310.1 360 53.6
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 9.7e-82 307.8 341 54.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.2e-81 306.6 373 50.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.1e-80 304.3 333 55.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.3e-80 302.0 364 51.4
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 4.5e-79 298.9 360 52.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.9e-78 296.2 371 50.9
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 6.5e-78 295.0 339 54.6
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 8.5e-78 294.7 357 52.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 7.2e-77 291.6 357 51.8
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.1e-76 290.0 357 51.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.1e-76 290.0 366 51.4
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 6.1e-76 288.5 326 52.8
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.0e-75 287.7 371 50.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.0e-75 287.7 357 51.0
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.7e-74 281.2 316 50.0
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.2e-73 280.0 316 50.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.2e-73 280.0 357 49.3
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.8e-73 279.6 346 50.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.2e-73 278.1 352 52.3
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.2e-71 274.2 360 49.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.7e-71 273.1 342 49.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.5e-71 272.7 372 48.9
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.5e-71 272.7 339 49.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.5e-71 272.3 363 47.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.0e-70 271.2 375 45.6
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.0e-70 271.2 355 48.7
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-70 270.4 342 50.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.6e-68 263.8 330 51.2
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.3e-67 260.0 400 45.2
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.2e-66 257.7 376 43.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.0e-66 256.9 336 48.8
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.6e-66 256.5 347 49.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 9.8e-66 254.6 343 47.8
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-65 254.2 365 46.8
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.3e-65 254.2 341 47.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.8e-65 252.3 368 46.5
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.8e-64 250.4 390 44.1
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.0e-63 246.9 337 49.9
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-63 246.9 336 47.3
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.3e-62 244.2 337 49.6
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.7e-62 243.8 364 44.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.3e-62 243.4 328 48.2
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.6e-60 237.3 362 44.2
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.8e-59 233.8 311 45.7
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-58 231.1 334 45.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.0e-58 230.3 349 43.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.2e-57 226.9 347 46.1
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.1e-56 224.6 273 50.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.1e-56 224.6 273 50.5
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-55 220.7 302 48.7
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.0e-55 220.3 323 46.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.5e-55 219.2 324 43.5
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 4.5e-55 219.2 400 39.5
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.0e-54 218.0 369 42.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.7e-54 217.2 326 43.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.3e-54 216.9 310 45.5
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.8e-54 216.1 322 45.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 5.0e-54 215.7 321 45.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.0e-51 206.5 323 44.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.0e-51 206.5 344 41.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 4.0e-51 206.1 327 42.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 5.2e-51 205.7 352 43.5
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.4e-50 202.6 374 39.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.2e-49 200.3 323 40.2
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.7e-49 199.5 310 42.3
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.3e-49 198.4 318 42.8
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-48 198.0 334 41.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-48 197.2 326 40.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 5.4e-48 195.7 352 42.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-47 194.1 331 41.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.5e-47 193.0 304 41.4
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-47 193.0 330 40.3
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.6e-47 192.6 313 42.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.8e-47 191.8 312 42.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.0e-46 191.4 314 42.4
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.3e-46 190.3 356 36.0
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.5e-45 186.8 351 37.6
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 3.3e-45 186.4 135 70.4
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.3e-45 186.0 360 39.2
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.5e-45 184.9 317 42.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-44 184.5 318 41.8
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.6e-44 184.1 311 41.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.1e-44 183.7 319 41.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.7e-44 182.6 314 43.9
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-43 180.6 320 42.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-43 180.3 320 42.5
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-43 180.3 320 42.5
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 5.2e-43 179.1 311 42.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.7e-41 174.1 320 37.2
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 6.4e-41 172.2 309 41.7
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.4e-40 171.0 338 38.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.1e-40 169.5 313 38.3
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-39 166.4 329 39.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 7.8e-39 165.2 321 39.9
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.0e-38 164.9 311 40.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.3e-38 164.5 325 37.8
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.7e-38 164.1 318 42.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.3e-38 163.7 325 37.8
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.0e-38 162.5 311 40.8
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.6e-38 162.2 324 38.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 8.6e-38 161.8 336 38.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.5e-37 160.2 306 39.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.1e-35 154.8 122 66.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.4e-35 154.5 325 38.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.3e-35 153.7 199 47.7
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.0e-35 152.9 311 37.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 4.0e-35 152.9 281 37.0
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 5.2e-35 152.5 281 37.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.2e-35 152.5 370 35.1
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.2e-34 151.4 371 35.8
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.3e-33 147.9 376 34.0
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.7e-33 147.5 331 35.6
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 4.9e-33 146.0 310 37.1
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 8.3e-33 145.2 318 35.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 8.3e-33 145.2 318 35.8
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.4e-32 144.4 135 57.8
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.1e-32 142.1 248 42.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.1e-31 140.6 364 33.0
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.1e-31 140.6 320 36.6
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.3e-30 137.1 107 69.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 5.1e-30 136.0 161 50.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.6e-30 135.6 358 33.8
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 8.6e-30 135.2 436 30.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.3e-29 133.3 111 67.6
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.3e-29 133.3 111 67.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 8.1e-28 128.6 352 32.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 8.1e-28 128.6 352 32.4
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.1e-27 128.3 123 56.9
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 8.9e-27 125.2 226 41.6
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.2e-26 124.8 352 31.8
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.6e-26 123.6 223 42.2
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-25 121.3 314 35.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-25 121.3 314 35.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.3e-25 121.3 314 35.7
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.2e-25 120.6 352 33.2
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.9e-25 120.2 165 48.5
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 4.9e-25 119.4 164 50.0
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 8.4e-25 118.6 322 32.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 8.4e-25 118.6 191 38.7
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 8.4e-25 118.6 136 51.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.1e-24 118.2 163 46.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.9e-24 117.5 105 50.5
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-24 117.5 329 34.0
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.4e-24 117.1 73 79.5
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.1e-24 116.3 303 33.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.2e-24 115.2 145 45.5
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.6e-23 114.4 168 47.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 7.8e-23 112.1 165 50.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.3e-22 111.3 109 57.8
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.7e-22 108.6 73 71.2
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.9e-21 107.5 165 47.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 8.1e-20 102.1 164 38.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.8e-19 100.9 252 30.6
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 4.0e-19 99.8 306 30.1
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.5e-15 86.7 261 30.7
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.3e-14 84.0 128 39.8
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 2.3e-14 84.0 164 35.4
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.8e-11 74.3 43 81.4
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.2e-10 71.6 90 46.7
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 9.9e-10 68.6 90 43.3
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-09 68.2 90 43.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.9e-08 64.3 91 39.6
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 9.3e-08 62.0 90 37.8
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 6.0e-07 59.3 69 43.5
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 8.7e-06 55.5 71 36.6


User provided reference genes

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