Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 4.4e-104 381.3 197 100.0
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 9.2e-102 373.6 197 97.0
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.8e-81 306.2 177 88.1
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 6.8e-73 277.7 178 78.7
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 6.0e-69 264.6 172 75.6
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 9.6e-67 257.3 171 76.6
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.5e-64 250.0 170 74.7
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.0e-64 249.6 175 73.1
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 2.2e-63 246.1 173 73.4
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.9e-63 245.7 172 70.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.8e-63 245.4 173 70.5
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 4.9e-63 245.0 173 71.1
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 8.4e-63 244.2 170 72.4
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.1e-62 243.8 179 70.4
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.1e-62 243.8 173 69.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.1e-62 243.8 173 69.9
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.1e-62 243.8 179 70.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.4e-62 243.4 173 70.5
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.9e-62 243.0 170 71.8
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.2e-62 242.3 173 69.4
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 3.2e-62 242.3 183 68.3
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.2e-62 241.9 170 72.4
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 5.4e-62 241.5 174 71.3
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 5.4e-62 241.5 172 70.9
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 9.3e-62 240.7 173 68.8
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 9.3e-62 240.7 172 72.7
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.6e-61 240.0 174 68.4
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.6e-61 240.0 169 73.4
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.1e-61 239.6 171 74.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.1e-61 239.6 179 68.7
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 2.7e-61 239.2 173 69.9
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.6e-61 238.4 179 68.2
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 6.0e-61 238.0 170 71.8
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 6.0e-61 238.0 171 69.6
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 7.8e-61 237.7 173 70.5
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.3e-60 236.9 173 71.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.3e-60 236.9 170 69.4
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-60 236.5 166 71.7
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-60 236.5 166 71.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.7e-60 236.5 174 68.4
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.7e-60 236.5 173 68.2
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.3e-60 236.1 172 70.9
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.9e-60 235.3 172 70.9
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 3.9e-60 235.3 173 69.9
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 5.1e-60 235.0 174 71.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 5.1e-60 235.0 172 68.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 6.6e-60 234.6 172 70.3
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 8.7e-60 234.2 172 68.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.1e-59 233.8 162 71.6
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.1e-59 233.8 170 71.2
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.1e-59 233.8 166 72.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-59 233.4 166 71.1
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.5e-59 233.4 166 71.1
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.5e-59 233.4 166 69.9
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.5e-59 233.4 170 71.2
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.5e-59 232.6 166 71.1
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.5e-59 232.6 179 67.0
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 4.3e-59 231.9 164 71.3
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 4.3e-59 231.9 166 70.5
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 5.6e-59 231.5 171 70.8
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.3e-59 231.1 164 69.5
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 7.3e-59 231.1 173 68.8
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.3e-58 230.3 172 68.0
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.6e-58 229.9 166 70.5
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.6e-58 229.9 170 67.1
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 3.6e-58 228.8 164 69.5
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 3.6e-58 228.8 164 69.5
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-57 227.3 166 68.7
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.1e-57 227.3 170 65.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 1.8e-57 226.5 176 67.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.8e-57 226.5 161 71.4
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.4e-57 226.1 189 64.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.1e-57 225.7 164 68.9
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 3.1e-57 225.7 164 68.9
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.1e-57 225.7 190 62.1
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.0e-57 225.3 166 69.3
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 4.0e-57 225.3 163 69.3
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 5.3e-57 224.9 164 68.9
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 9.0e-57 224.2 193 64.2
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-56 223.8 161 70.8
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.2e-56 223.8 165 67.9
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.5e-56 223.4 176 65.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.5e-56 223.4 185 60.5
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.6e-56 222.6 180 65.6
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 5.8e-56 221.5 170 67.6
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.3e-55 220.3 165 69.1
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.7e-55 219.9 169 68.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 2.2e-55 219.5 165 67.3
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.9e-55 219.2 173 63.0
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.9e-55 219.2 173 66.5
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 3.8e-55 218.8 209 57.4
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.8e-55 218.8 172 64.5
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.9e-55 218.4 165 67.3
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.9e-55 218.4 158 69.6
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 4.9e-55 218.4 169 69.8
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.9e-55 218.4 175 62.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 2.4e-54 216.1 169 66.9
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 3.2e-54 215.7 184 62.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 4.2e-54 215.3 171 66.7
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 4.2e-54 215.3 174 62.1
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 5.4e-54 214.9 160 63.8
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 5.4e-54 214.9 163 63.8
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 7.1e-54 214.5 159 69.2
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 7.1e-54 214.5 161 65.2
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.6e-53 213.4 165 64.2
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 2.1e-53 213.0 181 62.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.5e-53 212.2 156 71.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 4.6e-53 211.8 195 58.5
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 4.6e-53 211.8 174 62.6
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 4.6e-53 211.8 163 63.2
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 7.9e-53 211.1 173 64.7
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.0e-52 210.7 181 61.9
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 6.7e-52 208.0 164 62.8
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-51 206.8 187 58.8
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.5e-51 206.8 170 61.2
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.5e-51 206.1 153 68.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.5e-51 206.1 153 68.6
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.3e-51 205.7 153 68.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 7.4e-51 204.5 172 60.5
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 7.4e-51 204.5 218 52.8
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 9.6e-51 204.1 146 71.9
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 6.2e-50 201.4 177 59.9
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 8.1e-50 201.1 171 66.7
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.8e-49 199.9 156 67.9
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.4e-49 199.5 170 60.0
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 3.1e-49 199.1 188 58.5
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 7.6e-48 194.5 173 58.4
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 3.8e-47 192.2 150 66.0
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 4.2e-46 188.7 128 75.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 4.2e-46 188.7 165 62.4
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.6e-45 186.8 123 74.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.1e-45 186.4 125 73.6
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 7.9e-45 184.5 123 72.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 7.9e-45 184.5 123 74.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.3e-44 183.0 122 73.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.3e-44 183.0 120 72.5
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 3.0e-44 182.6 123 72.4
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 9.6e-43 177.6 145 66.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.3e-42 177.2 130 70.0
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.6e-42 176.8 123 74.8
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.1e-42 176.4 130 71.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.1e-38 164.1 121 66.1
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.2e-38 162.2 143 56.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 9.3e-38 161.0 167 50.9
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 9.3e-38 161.0 152 50.7
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.5e-37 159.1 148 54.7
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.8e-36 156.8 161 48.4
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.1e-35 154.1 154 59.1
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.1e-35 154.1 119 65.5
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.5e-35 153.7 167 49.7
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 3.3e-35 152.5 123 61.8
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.6e-34 150.2 163 46.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 3.1e-33 146.0 166 45.2
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.9e-32 141.7 112 66.1
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 6.1e-29 131.7 90 70.0
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.2e-26 123.2 108 60.2
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.0e-23 114.4 111 57.7
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 4.1e-17 92.4 89 57.3
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.4e-12 77.4 79 49.4
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 8.2e-10 68.2 44 75.0
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 4.1e-09 65.9 46 76.1
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 4.1e-09 65.9 46 76.1
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 1.2e-08 64.3 47 74.5
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.6e-08 63.9 46 58.7
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-08 63.5 47 72.3
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-08 63.5 46 71.7


User provided reference genes

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