Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 0.0e+00 1091.6 579 100.0
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 0.0e+00 1082.8 579 99.1
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.2e-290 1002.7 579 93.6
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 3.8e-289 997.7 585 92.8
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 3.3e-232 808.5 582 78.9
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.4e-198 696.8 637 67.8
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 2.9e-156 556.2 629 56.6
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 5.9e-133 478.8 600 53.3
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 1.0e-132 478.0 596 53.5
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 1.2e-101 374.8 630 47.9
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 3.8e-95 353.2 600 44.2
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 1.5e-91 341.3 688 42.7
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 1.7e-71 274.6 587 38.2
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 3.8e-71 273.5 608 40.5
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 2.3e-68 264.2 570 40.4
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 3.9e-68 263.5 493 44.2
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 6.7e-68 262.7 565 41.2
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 9.1e-65 252.3 658 36.2
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 2.0e-64 251.1 622 39.4
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 4.5e-64 250.0 550 38.4
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 1.3e-63 248.4 653 35.7
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 1.3e-63 248.4 603 38.3
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 5.1e-60 236.5 619 37.6
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 2.0e-59 234.6 364 45.9
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 3.3e-59 233.8 633 35.5
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 1.4e-57 228.4 593 36.8
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 9.1e-57 225.7 611 39.0
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 2.0e-56 224.6 507 37.1
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 1.3e-55 221.9 623 36.9
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 3.6e-53 213.8 598 35.3
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 1.5e-51 208.4 474 39.5
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 4.4e-51 206.8 534 36.0
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 5.3e-49 199.9 344 44.8
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 2.0e-48 198.0 606 35.6
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 4.5e-48 196.8 428 37.1
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 5.9e-48 196.4 537 35.6
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 5.9e-48 196.4 610 35.4
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 1.1e-46 192.2 641 31.5
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 5.5e-46 189.9 541 34.9
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 5.5e-46 189.9 541 34.9
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 1.6e-45 188.3 566 34.1
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 8.0e-45 186.0 528 34.8
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 4.0e-44 183.7 503 35.6
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 6.7e-44 183.0 569 34.3
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.6e-43 181.0 626 33.2
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 5.7e-43 179.9 367 40.1
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 5.7e-43 179.9 367 38.7
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.2e-42 177.9 631 33.0
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.2e-42 177.9 395 38.7
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 2.8e-42 177.6 595 33.3
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 3.1e-41 174.1 532 34.2
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 1.2e-40 172.2 694 30.1
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 2.0e-40 171.4 442 39.4
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 1.7e-39 168.3 504 31.0
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 2.9e-39 167.5 215 49.3
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 2.9e-39 167.5 538 35.9
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 2.9e-39 167.5 464 36.2
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 5.0e-39 166.8 590 34.6
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 6.5e-39 166.4 550 32.4
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 8.5e-39 166.0 282 42.9
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 1.5e-38 165.2 409 35.2
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 2.5e-38 164.5 480 34.4
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 3.2e-38 164.1 546 32.8
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 4.7e-37 160.2 543 36.6
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 3.0e-36 157.5 612 31.5
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 5.2e-36 156.8 637 33.6
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 6.8e-36 156.4 554 35.0
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 1.5e-35 155.2 366 40.2
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 2.6e-35 154.5 597 34.3
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 3.4e-35 154.1 592 34.1
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 5.7e-35 153.3 292 38.4
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 7.5e-35 152.9 379 36.7
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 1.3e-34 152.1 458 30.8
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 2.4e-33 147.9 666 32.0
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 3.1e-33 147.5 446 34.3
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 2.0e-32 144.8 227 44.5
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 3.5e-32 144.1 586 29.7
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 1.3e-31 142.1 406 33.7
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 1.3e-31 142.1 542 31.0
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 2.2e-31 141.4 522 31.4
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 5.0e-31 140.2 502 32.5
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 6.5e-31 139.8 405 32.8
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 6.5e-31 139.8 452 32.1
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 8.5e-31 139.4 262 37.0
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 1.1e-30 139.0 610 30.7
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 1.1e-30 139.0 607 30.3
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 1.1e-30 139.0 541 29.2
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 1.6e-29 135.2 420 32.9
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 2.8e-29 134.4 405 34.1
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 3.6e-29 134.0 413 32.9
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 3.6e-29 134.0 414 32.9
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 8.0e-29 132.9 264 38.3
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 3.0e-28 131.0 402 34.8
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 5.2e-28 130.2 443 30.7
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 7.5e-27 126.3 561 31.2
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 1.4e-25 122.1 242 34.7
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 1.2e-24 119.0 248 40.7
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 5.0e-23 113.6 405 32.1
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 1.1e-14 85.9 572 25.9
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.6e-13 80.9 596 26.3
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 4.7e-13 80.5 270 25.9
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 1.1e-12 79.3 425 28.0
CSS0030010 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 3.7e-10 70.9 281 32.0
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 5.4e-09 67.0 195 32.3
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 3.9e-07 60.8 283 23.7
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 6.6e-07 60.1 114 39.5


User provided reference genes

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