Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 9.7e-106 387.1 239 100.0
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.2e-102 375.9 238 98.3
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.7e-98 361.3 188 97.3
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.0e-95 352.8 187 95.7
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 8.6e-78 294.3 187 79.7
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.5e-74 283.5 187 76.5
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.5e-74 283.5 187 76.5
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.5e-74 283.5 187 75.9
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.9e-73 279.3 188 76.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.4e-72 276.9 187 74.3
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.4e-72 276.9 185 74.6
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.8e-72 276.6 187 73.3
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 4.1e-72 275.4 185 73.5
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 4.1e-72 275.4 185 73.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 9.2e-72 274.2 185 74.6
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.0e-70 270.8 187 73.3
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.3e-70 269.6 185 74.1
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.3e-69 265.8 185 70.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 7.3e-69 264.6 205 68.8
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.6e-68 262.3 185 69.7
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 8.0e-68 261.2 185 71.9
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 8.0e-68 261.2 185 73.0
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.1e-67 260.8 185 68.6
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.1e-67 260.8 184 70.1
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.8e-67 260.0 184 71.7
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-67 258.8 185 67.0
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-67 258.8 185 67.0
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 5.2e-67 258.5 185 71.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 5.2e-67 258.5 182 71.4
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 8.9e-67 257.7 185 71.9
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 8.9e-67 257.7 185 71.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 8.9e-67 257.7 185 71.9
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.2e-66 257.3 185 71.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.5e-66 256.9 185 70.3
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.5e-66 256.9 188 69.7
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.6e-66 256.1 185 69.7
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 3.4e-66 255.8 186 71.5
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.4e-66 255.8 185 68.1
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.8e-66 255.0 184 68.5
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 7.5e-66 254.6 188 68.6
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.9e-65 252.7 176 70.5
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 6.4e-65 251.5 187 69.0
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 6.4e-65 251.5 200 67.5
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 8.3e-65 251.1 175 73.1
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.1e-64 250.8 184 69.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.4e-64 250.4 187 69.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.4e-64 250.4 185 70.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.9e-64 250.0 187 67.9
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 2.4e-64 249.6 177 71.2
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 2.4e-64 249.6 187 69.5
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 4.1e-64 248.8 190 68.4
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 4.1e-64 248.8 189 67.2
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 9.2e-64 247.7 187 68.4
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.6e-63 246.9 185 67.0
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.6e-63 246.9 189 68.3
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.6e-63 246.9 187 68.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 2.0e-63 246.5 187 67.9
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.0e-63 246.5 175 70.9
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 3.5e-63 245.7 185 67.0
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.5e-63 245.7 206 63.6
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.6e-63 245.4 188 68.1
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.6e-63 245.4 189 68.3
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.6e-63 245.4 190 64.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 6.0e-63 245.0 188 67.6
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 6.0e-63 245.0 182 67.0
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 7.8e-63 244.6 188 68.1
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 1.0e-62 244.2 184 67.9
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.7e-62 243.4 189 66.7
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.3e-62 243.0 182 68.1
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.3e-62 243.0 189 68.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.3e-62 243.0 189 68.3
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.3e-62 243.0 187 67.9
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.3e-62 243.0 189 66.1
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.1e-61 240.7 185 65.9
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 2.5e-61 239.6 189 65.6
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.3e-61 239.2 178 69.1
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 7.3e-61 238.0 174 70.1
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 2.8e-60 236.1 188 64.9
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.6e-60 235.7 186 66.7
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 6.2e-60 235.0 188 64.4
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 6.2e-60 235.0 189 65.6
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.1e-59 234.2 178 67.4
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.8e-59 233.4 189 64.0
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 3.1e-59 232.6 184 65.2
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 8.9e-59 231.1 179 65.4
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 2.0e-58 229.9 182 63.7
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 4.9e-57 225.3 185 62.7
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.1e-56 224.2 211 57.3
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.9e-56 223.4 175 65.1
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.4e-56 223.0 185 61.6
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.2e-56 222.6 156 71.8
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 5.4e-56 221.9 189 62.4
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 7.1e-56 221.5 152 72.4
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.6e-55 220.3 174 71.3
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.1e-53 214.2 156 67.9
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 9.5e-53 211.1 182 61.0
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 2.8e-52 209.5 176 61.4
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 6.2e-52 208.4 185 56.2
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.1e-51 207.6 191 56.5
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.1e-51 207.6 274 44.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 6.8e-51 204.9 186 57.0
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 8.4e-49 198.0 185 54.6
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 5.4e-48 195.3 153 64.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 9.2e-48 194.5 185 56.2
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 3.5e-47 192.6 185 54.6
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.6e-47 192.2 182 52.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.0e-46 191.0 185 54.6
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 3.9e-46 189.1 185 55.1
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.5e-45 187.2 185 54.6
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 4.7e-44 182.2 184 57.6
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 8.1e-44 181.4 185 53.5
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 3.1e-43 179.5 185 53.5
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.3e-41 174.1 185 51.9
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 3.8e-41 172.6 185 51.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 3.8e-41 172.6 185 51.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 3.8e-41 172.6 185 51.4
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 5.4e-40 168.7 186 50.0
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 2.7e-39 166.4 186 49.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 2.7e-39 166.4 186 49.5
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 1.8e-35 153.7 148 56.1
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.2e-34 151.0 154 57.8
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.7e-33 147.1 121 63.6
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.1e-32 144.4 106 69.8
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.4e-32 143.3 86 83.7
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 9.3e-32 141.4 185 45.9
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.2e-31 141.0 114 64.9
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 5.5e-24 115.5 72 79.2
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.1e-21 107.8 78 65.4
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 4.3e-21 105.9 79 67.1
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.2e-18 97.8 83 62.7
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.2e-18 97.8 155 40.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-17 94.0 91 51.6
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.2e-17 93.6 82 61.0
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 8.4e-17 91.7 66 74.2
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.5e-16 90.1 159 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 3.5e-15 86.3 163 37.4
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-14 84.3 80 52.5
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.3e-14 83.6 85 51.8
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.7e-14 82.0 80 51.2
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.1e-13 81.3 119 37.0
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 2.5e-13 80.1 76 57.9
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.3e-13 79.3 90 54.4


User provided reference genes

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