Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 0.0e+00 1602.0 804 100.0
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1463.4 761 97.5
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1453.7 760 97.2
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1438.3 746 98.1
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1310.4 728 92.0
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1191.0 750 80.5
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1188.3 747 81.4
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1180.2 764 79.5
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.1e-302 1043.1 756 70.4
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 1.2e-301 1039.6 749 71.7
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 1.3e-295 1019.6 748 69.7
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 8.4e-295 1016.9 746 70.1
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 1.5e-291 1006.1 744 69.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 2.5e-291 1005.4 764 68.8
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 3.3e-291 1005.0 741 69.5
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.6e-290 1002.7 741 69.4
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.1e-290 1002.3 762 67.7
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 5.3e-289 997.7 785 66.4
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 6.9e-289 997.3 764 67.3
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 2.2e-287 992.3 761 67.0
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 2.7e-285 985.3 747 68.1
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 2.7e-285 985.3 853 62.8
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 1.0e-284 983.4 745 68.2
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 1.5e-283 979.5 748 67.8
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 1.3e-282 976.5 750 66.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.6e-282 976.1 746 67.0
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 4.8e-282 974.5 743 67.7
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 4.1e-281 971.5 745 67.2
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 5.3e-281 971.1 763 65.1
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 6.5e-279 964.1 750 66.9
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 8.5e-279 963.8 744 67.2
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 1.2e-277 959.9 748 65.5
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 2.1e-277 959.1 747 65.6
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 7.9e-277 957.2 729 67.9
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 1.0e-276 956.8 744 65.6
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 3.3e-275 951.8 747 64.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 9.7e-275 950.3 766 63.8
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 1.7e-274 949.5 744 65.2
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 6.3e-274 947.6 739 66.3
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 1.1e-273 946.8 766 63.6
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 1.1e-273 946.8 747 64.0
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 5.3e-273 944.5 746 65.0
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 2.0e-272 942.6 752 66.1
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 5.9e-272 941.0 746 66.1
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 5.9e-272 941.0 748 64.8
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 2.9e-271 938.7 750 64.8
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 6.5e-271 937.6 739 64.3
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 6.5e-271 937.6 751 65.1
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 8.5e-271 937.2 747 64.7
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 3.6e-269 931.8 747 64.4
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.8e-268 929.5 739 65.2
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 5.1e-268 927.9 748 64.0
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 1.5e-267 926.4 756 64.0
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 1.7e-266 922.9 738 64.4
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 4.8e-266 921.4 738 64.4
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 4.1e-265 918.3 762 63.5
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 7.0e-265 917.5 759 63.1
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.2e-264 916.8 755 63.8
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 5.9e-264 914.4 748 62.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 7.7e-264 914.1 754 63.5
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 5.0e-263 911.4 780 61.4
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.1e-262 910.2 746 64.1
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.5e-262 907.9 755 63.2
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 7.2e-262 907.5 768 62.5
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 2.7e-261 905.6 752 63.7
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 8.0e-261 904.0 751 63.4
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 2.3e-260 902.5 754 63.3
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 3.0e-260 902.1 752 63.3
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 3.0e-260 902.1 754 63.3
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 5.2e-260 901.4 743 63.7
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 5.2e-260 901.4 743 63.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 6.7e-260 901.0 748 61.6
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 6.7e-260 901.0 747 62.7
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.5e-259 899.8 748 62.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 2.4e-257 892.5 740 63.5
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 3.1e-257 892.1 749 61.8
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 4.1e-257 891.7 750 62.9
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 7.0e-257 891.0 748 61.5
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 2.6e-256 889.0 779 61.2
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 3.5e-256 888.6 746 61.9
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 3.5e-256 888.6 747 61.7
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 4.5e-256 888.3 785 59.5
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.0e-255 887.1 748 62.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.1e-254 883.6 748 61.6
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 1.4e-252 876.7 762 62.3
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 3.3e-251 872.1 700 64.6
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 3.7e-250 868.6 751 62.2
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.6e-248 863.2 764 59.8
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.3e-247 860.1 746 60.3
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 7.2e-246 854.4 749 61.0
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 8.0e-245 850.9 741 59.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.7e-239 833.2 754 57.7
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.4e-217 760.4 845 51.2
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.7e-216 756.1 749 55.4
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 8.1e-213 744.6 555 69.9
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 9.2e-209 731.1 563 66.1
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 2.4e-201 706.4 646 59.6
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.6e-190 668.7 611 59.2
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.1e-166 591.3 433 67.0
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 7.7e-163 578.6 739 46.3
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.4e-156 557.8 764 42.5
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.3e-141 508.1 767 40.9
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.3e-141 508.1 380 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.1e-132 478.4 752 39.4
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 4.2e-129 466.5 742 38.7
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-128 464.9 348 67.2
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.3e-125 452.2 415 55.2
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.6e-99 368.2 393 52.4
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.1e-89 335.5 248 70.2
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 4.3e-89 333.6 313 56.9
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.7e-77 295.0 271 56.1
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 4.6e-75 287.0 766 29.2
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-71 275.4 449 38.5
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 6.4e-69 266.5 229 62.4
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.4e-68 265.4 208 65.4
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.1e-64 251.5 237 59.5
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 4.5e-62 243.8 195 60.5
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.4e-60 238.8 782 28.8
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 7.4e-49 199.9 180 55.6
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 7.4e-41 173.3 134 68.7
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.7e-37 162.2 108 75.9
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.4e-36 159.1 121 66.9
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.8e-26 125.6 107 54.2
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 9.1e-23 113.2 84 66.7
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 5.0e-21 107.5 95 60.0
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 3.0e-18 98.2 64 73.4
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 5.7e-17 94.0 68 66.2
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.8e-17 93.2 70 61.4
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.7e-16 92.4 81 58.0
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.8e-15 89.0 66 65.2
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 9.1e-15 86.7 608 21.2
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.4e-09 68.2 78 46.2
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.3e-08 66.2 50 66.0
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 6.3e-08 63.9 44 70.5
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.9e-06 57.4 58 55.2


User provided reference genes

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