Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 9.7e-95 350.1 177 100.0
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 5.8e-71 271.2 142 97.9
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.9e-70 268.9 142 96.5
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.7e-60 235.7 144 87.5
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 6.6e-43 177.9 167 66.5
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 1.1e-18 97.4 125 52.8
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 5.7e-18 95.1 137 42.3
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 5.3e-16 88.6 177 38.4
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 9.0e-16 87.8 120 50.0
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 1.5e-15 87.0 112 45.5
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.5e-15 87.0 150 36.0
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.5e-15 87.0 129 41.9
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 2.6e-15 86.3 119 45.4
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 3.4e-15 85.9 91 52.7
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 4.5e-15 85.5 83 50.6
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 1.0e-14 84.3 117 45.3
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.3e-14 84.0 107 44.9
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.7e-14 83.6 87 51.7
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 1.7e-14 83.6 138 37.0
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 2.9e-14 82.8 121 43.8
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 6.5e-14 81.6 156 38.5
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.4e-13 80.5 101 44.6
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.4e-13 80.5 151 35.8
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 1.4e-13 80.5 79 49.4
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.9e-13 80.1 128 39.8
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 2.5e-13 79.7 114 43.9
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.5e-13 79.7 103 44.7
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.5e-13 79.7 105 44.8
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 5.5e-13 78.6 131 38.2
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 7.2e-13 78.2 104 44.2
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 9.3e-13 77.8 97 45.4
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 9.3e-13 77.8 91 51.6
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 9.3e-13 77.8 89 48.3
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.2e-12 77.4 92 43.5
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.7e-12 76.3 81 49.4
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 3.5e-12 75.9 115 40.9
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 6.1e-12 75.1 134 38.1
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 1.0e-11 74.3 147 38.8
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.3e-11 73.9 92 47.8
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.3e-11 73.9 96 42.7
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 3.0e-11 72.8 107 43.9
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.1e-10 70.9 141 35.5
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 1.9e-10 70.1 91 39.6
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.9e-10 70.1 90 46.7
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 2.5e-10 69.7 82 45.1
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.5e-10 69.7 122 38.5
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 3.3e-10 69.3 108 39.8
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 3.3e-10 69.3 108 39.8
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 3.3e-10 69.3 153 34.0
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 5.7e-10 68.6 116 40.5
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 7.4e-10 68.2 109 36.7
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 9.7e-10 67.8 86 41.9
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 9.7e-10 67.8 92 43.5
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 9.7e-10 67.8 85 45.9
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.6e-09 67.0 98 43.9
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.8e-09 66.2 99 35.4
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 2.8e-09 66.2 88 44.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.7e-09 65.9 87 42.5
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 6.3e-09 65.1 173 34.1
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 8.2e-09 64.7 105 40.0
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.1e-08 64.3 90 43.3
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.4e-08 63.9 58 50.0
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 2.4e-08 63.2 114 40.4
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.4e-08 63.2 133 39.8
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 4.1e-08 62.4 90 43.3
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 4.1e-08 62.4 90 43.3
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 4.1e-08 62.4 86 43.0
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 7.7e-07 58.2 97 41.2
unitig_32.g11793 Utricularia gibba HOM05D008015 ORTHO05D009180 7.7e-07 58.2 107 39.3
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.3e-06 57.4 99 41.4
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 3.8e-06 55.8 131 36.6
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 5.0e-06 55.5 119 33.6
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 6.5e-06 55.1 106 37.7
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 6.5e-06 55.1 92 41.3
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 8.5e-06 54.7 95 41.1
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 8.5e-06 54.7 90 44.4


User provided reference genes

Program Settings