Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 3.7e-81 304.7 140 100.0
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.4e-80 302.0 140 99.3
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-78 296.2 140 97.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-78 295.4 140 95.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 6.6e-78 293.9 140 95.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.3e-77 291.6 140 96.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.3e-77 291.2 139 94.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 9.5e-77 290.0 134 97.0
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.6e-74 282.0 140 92.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-73 279.6 140 91.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.0e-67 260.0 134 84.3
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-66 256.1 137 81.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.9e-65 251.1 137 78.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.9e-64 249.2 137 77.4
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 77.6
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.2e-64 248.4 137 77.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.0e-64 247.3 136 77.2
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.5e-63 245.0 137 75.2
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.8e-63 243.8 137 74.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 7.8e-63 243.8 137 74.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.3e-62 243.0 136 75.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.3e-62 243.0 137 75.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.7e-62 242.7 135 76.3
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.7e-62 242.7 134 77.6
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.0e-62 241.9 137 74.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 5.0e-62 241.1 144 70.8
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 6.6e-62 240.7 134 74.6
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 6.6e-62 240.7 132 76.5
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 6.6e-62 240.7 134 77.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 6.6e-62 240.7 134 73.9
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 8.6e-62 240.4 137 72.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.6e-62 240.4 136 74.3
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 74.8
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 76.3
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 74.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 76.9
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 76.1
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 74.8
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.9e-61 239.2 135 74.8
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-61 239.2 140 71.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.5e-61 238.8 135 76.3
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.3e-61 238.4 135 72.6
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 4.3e-61 238.0 137 75.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 75.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 75.4
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 75.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 7.3e-61 237.3 134 77.6
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.6e-60 236.1 137 73.0
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.1e-60 235.7 135 71.9
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.1e-60 235.7 137 71.5
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.9
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.8e-60 235.3 136 71.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 3.6e-60 235.0 135 74.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.6e-60 235.0 133 74.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 4.7e-60 234.6 133 75.2
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.7e-60 234.6 137 70.8
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.7e-60 234.6 134 75.4
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.2e-60 234.2 127 77.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 6.2e-60 234.2 134 74.6
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 8.1e-60 233.8 134 73.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 8.1e-60 233.8 135 74.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.1e-59 233.4 137 74.5
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.1e-59 233.4 137 72.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 70.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.8e-59 232.6 136 74.3
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.3e-59 232.3 121 82.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.1e-59 231.9 140 69.3
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 3.1e-59 231.9 135 72.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 5.2e-59 231.1 135 70.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.2e-59 231.1 135 71.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 8.9e-59 230.3 135 70.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.0e-58 229.2 132 72.7
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 2.0e-58 229.2 123 77.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.6e-58 228.8 127 76.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 4.4e-58 228.0 134 72.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 5.8e-58 227.6 135 71.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 9.8e-58 226.9 137 69.3
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 72.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.7e-57 226.1 137 69.3
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.7e-57 226.1 135 69.6
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 4.9e-57 224.6 130 70.8
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 6.4e-57 224.2 131 71.8
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 6.4e-57 224.2 131 72.5
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 8.3e-57 223.8 136 69.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 70.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.9e-56 222.6 126 73.8
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.1e-56 220.7 121 75.2
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 9.2e-56 220.3 134 69.4
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 9.2e-56 220.3 135 69.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 70.1
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.1e-55 219.2 131 72.5
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 3.5e-55 218.4 138 68.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 4.6e-55 218.0 134 68.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 4.6e-55 218.0 134 68.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 7.8e-55 217.2 134 69.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 70.9
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-54 216.5 121 76.9
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 69.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.7e-54 216.1 137 67.9
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 5.1e-54 214.5 133 68.4
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.5e-53 213.0 134 68.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.9e-53 212.6 133 67.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-53 212.6 121 73.6
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.3e-53 211.8 134 65.7
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 3.3e-53 211.8 136 65.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 4.3e-53 211.5 134 66.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.3e-53 211.5 133 69.2
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.3e-53 211.5 125 73.6
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 5.6e-53 211.1 134 65.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 7.3e-53 210.7 139 64.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.2e-52 209.9 120 75.0
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.1e-52 209.1 133 66.9
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 6.2e-52 207.6 125 71.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.4e-51 206.5 136 63.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.0e-51 204.9 136 62.5
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.0e-51 204.9 125 64.8
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 6.8e-51 204.1 173 56.1
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 6.8e-51 204.1 133 66.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.2e-50 203.4 129 64.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.9e-49 198.7 140 61.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.9e-49 198.7 128 64.8
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.8e-49 198.4 134 65.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 6.4e-49 197.6 126 65.1
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.4e-49 197.2 135 61.5
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.9e-48 196.1 131 63.4
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.2e-48 195.3 116 67.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.0e-47 191.0 133 63.2
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-47 190.7 137 62.8
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.7e-46 189.5 133 62.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 4.7e-44 181.4 128 62.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 8.1e-44 180.6 112 68.8
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.4e-43 179.1 133 60.9
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 4.0e-43 178.3 101 71.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.4e-42 175.3 130 60.8
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.9e-41 172.2 99 73.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.8e-41 171.8 136 58.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.9e-38 161.8 125 56.0
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 8.7e-38 160.6 100 71.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.5e-37 159.8 118 58.5
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.5e-37 159.1 75 97.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.3e-36 156.8 96 72.9
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-35 153.7 122 54.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.1e-35 152.1 86 75.6
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 5.4e-32 141.4 147 42.9
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.0e-30 135.6 75 77.3
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.5e-26 123.2 74 74.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.5e-24 114.8 112 48.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.9e-22 108.6 63 73.0
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-21 107.1 78 59.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 4.0e-19 98.6 80 53.8
FAN26G2730 Fragaria x ananassa HOM05D047727 ORTHO05D207773 2.7e-07 59.3 103 40.8
FAN19G2898 Fragaria x ananassa HOM05D047727 ORTHO05D205236 1.8e-06 56.6 42 66.7


User provided reference genes

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