Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 8.3e-79 297.0 150 100.0
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 8.3e-79 297.0 150 100.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.5e-75 285.4 150 94.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 3.1e-73 278.5 150 91.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 4.4e-72 274.6 150 90.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 5.8e-72 274.2 150 90.7
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.1e-67 260.0 136 94.1
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.7e-63 246.1 147 81.0
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 4.1e-62 241.5 147 78.2
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 5.4e-62 241.1 147 79.6
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 5.1e-60 234.6 141 76.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.1e-57 226.9 139 76.3
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.8e-57 226.1 141 74.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 3.1e-57 225.3 142 72.5
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 3.1e-57 225.3 140 72.9
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 8.9e-57 223.8 142 71.8
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 8.9e-57 223.8 142 71.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 8.9e-57 223.8 139 74.8
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.2e-56 223.4 144 69.4
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.2e-56 223.4 143 72.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.2e-56 223.4 142 71.8
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.5e-56 223.0 139 75.5
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.5e-56 223.0 140 73.6
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.0e-56 222.6 137 75.2
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.0e-56 222.6 142 72.5
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 2.0e-56 222.6 139 73.4
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.6e-56 222.2 138 73.9
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 2.6e-56 222.2 142 70.4
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.4e-56 221.9 142 69.7
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 3.4e-56 221.9 139 74.1
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.4e-56 221.9 142 70.4
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.4e-56 221.5 142 71.1
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.6e-56 220.7 142 69.0
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 9.9e-56 220.3 142 69.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 9.9e-56 220.3 142 69.0
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 9.9e-56 220.3 142 71.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.3e-55 219.9 140 69.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.3e-55 219.9 142 69.0
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.3e-55 219.9 143 68.5
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.3e-55 219.9 140 72.1
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.3e-55 219.9 140 72.1
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.7e-55 219.5 142 69.0
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.7e-55 219.5 147 69.4
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.2e-55 219.2 141 70.9
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 6.4e-55 217.6 140 72.1
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 6.4e-55 217.6 143 70.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 8.4e-55 217.2 142 67.6
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 8.4e-55 217.2 141 67.4
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.1e-54 216.9 143 67.8
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.1e-54 216.9 142 70.4
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.4e-54 216.5 143 67.1
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.9e-54 216.1 135 75.6
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 2.4e-54 215.7 142 70.4
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 3.2e-54 215.3 142 68.3
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 4.1e-54 214.9 142 68.3
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.2e-54 213.8 138 69.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.2e-53 213.4 147 66.7
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.2e-53 213.4 161 64.0
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.6e-53 213.0 142 64.8
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.6e-53 213.0 140 68.6
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.1e-53 212.6 172 59.3
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 6.0e-53 211.1 141 73.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 7.8e-53 210.7 134 72.4
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.0e-52 210.3 141 68.1
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.3e-52 209.9 158 62.0
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.3e-52 209.9 145 69.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.3e-52 209.9 145 69.0
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.3e-52 209.9 141 72.3
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.3e-52 209.9 140 70.0
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.3e-52 209.1 141 68.8
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.1e-52 208.0 144 69.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.1e-51 206.8 145 66.2
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.1e-51 206.8 138 68.8
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.1e-51 206.8 141 68.1
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.5e-51 206.5 144 66.7
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.5e-51 205.7 140 67.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.3e-51 205.3 138 68.1
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.3e-51 205.3 138 68.1
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 4.3e-51 204.9 141 66.0
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 5.6e-51 204.5 145 64.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.6e-51 204.5 139 69.1
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 9.6e-51 203.8 141 66.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 9.6e-51 203.8 139 68.3
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.2e-50 203.4 142 67.6
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.6e-50 203.0 143 65.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.6e-50 203.0 143 65.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.1e-50 202.6 141 66.0
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.7e-50 201.4 140 67.9
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.2e-50 201.1 140 68.6
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 8.1e-50 200.7 141 65.2
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.1e-49 200.3 143 62.9
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-49 199.5 141 66.7
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.8e-49 199.5 139 64.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 2.4e-49 199.1 140 64.3
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.4e-49 199.1 102 95.1
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 3.1e-49 198.7 142 63.4
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.1e-49 198.7 139 65.5
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 6.9e-49 197.6 136 68.4
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 9.0e-49 197.2 136 66.9
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 9.0e-49 197.2 141 65.2
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 9.0e-49 197.2 144 65.3
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 9.0e-49 197.2 141 63.8
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.5e-48 196.4 139 63.3
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 2.6e-48 195.7 138 66.7
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 3.4e-48 195.3 140 64.3
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 5.8e-48 194.5 121 71.9
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 9.9e-48 193.7 136 61.8
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.9e-47 192.2 144 63.9
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 4.9e-47 191.4 115 77.4
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 8.4e-47 190.7 206 49.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 8.4e-47 190.7 120 70.0
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.4e-46 189.9 120 70.8
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.4e-46 189.9 141 61.0
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-46 189.5 141 63.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.2e-46 188.7 135 63.7
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 2.1e-45 186.0 143 59.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.0e-44 183.7 143 57.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.0e-44 183.7 144 54.9
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.0e-44 183.7 118 70.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.3e-44 183.3 139 63.3
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.7e-44 183.0 143 56.6
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.3e-44 182.6 121 69.4
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.3e-44 182.6 121 69.4
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 6.6e-44 181.0 118 71.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.5e-43 179.1 137 61.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 4.3e-43 178.3 141 58.2
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.8e-42 174.9 140 60.0
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 5.3e-41 171.4 115 70.4
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-40 169.9 145 57.2
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.0e-40 169.5 111 69.4
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 4.9e-39 164.9 117 61.5
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 8.4e-39 164.1 116 62.9
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 2.4e-38 162.5 145 55.2
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.5e-35 153.3 134 55.2
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.9e-35 152.9 125 60.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.9e-35 152.9 125 60.8
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.9e-31 138.3 131 55.0
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 3.5e-29 132.1 82 72.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 6.0e-29 131.3 99 63.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 7.9e-29 131.0 99 62.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 6.2e-26 121.3 138 45.7
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 8.2e-26 120.9 92 63.0
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-25 119.8 127 50.4
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 9.0e-25 117.5 131 46.6
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 5.8e-24 114.8 134 47.8
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.2e-22 108.6 135 41.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 7.9e-21 104.4 133 42.9
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.3e-20 102.8 137 37.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.0e-20 102.4 143 40.6
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.4e-19 97.8 133 38.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 2.2e-18 96.3 61 70.5
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.8e-18 95.9 59 72.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-17 92.8 135 39.3
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 2.0e-16 89.7 112 42.9
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 3.2e-14 82.4 123 35.0
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 7.2e-14 81.3 99 45.5
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 9.3e-14 80.9 55 63.6
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.8e-12 76.6 58 62.1
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-12 76.3 54 66.7
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-12 76.3 54 66.7
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.3e-12 76.3 54 66.7
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.0e-12 75.9 87 43.7
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.7e-10 70.1 49 61.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 8.2e-10 67.8 114 37.7


User provided reference genes

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