Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 1.5e-95 352.8 177 100.0
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 6.8e-88 327.4 162 99.4
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.7e-86 322.8 162 98.1
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 6.4e-70 267.7 169 81.1
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 5.2e-56 221.5 171 69.0
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 1.5e-55 219.9 165 68.5
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 4.4e-55 218.4 178 66.3
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 2.3e-51 206.1 174 64.4
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 6.6e-51 204.5 174 62.1
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.4e-48 196.1 174 60.3
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 6.8e-48 194.5 180 57.2
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 8.9e-48 194.1 137 70.8
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.5e-47 193.4 166 62.0
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 2.0e-47 193.0 166 61.4
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 3.4e-47 192.2 132 68.9
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 3.4e-47 192.2 171 55.6
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 3.4e-47 192.2 169 60.9
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 4.4e-47 191.8 164 62.2
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 2.2e-46 189.5 186 57.5
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 3.8e-46 188.7 206 54.4
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 6.4e-46 188.0 167 61.7
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 1.1e-45 187.2 175 58.9
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 1.4e-45 186.8 178 57.9
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 4.2e-45 185.3 172 58.7
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 4.2e-45 185.3 167 59.3
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 5.4e-45 184.9 167 59.9
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 5.4e-45 184.9 164 59.1
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.2e-44 183.7 173 59.5
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 1.2e-44 183.7 172 54.7
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 2.7e-44 182.6 167 58.1
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 2.7e-44 182.6 168 59.5
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 3.5e-44 182.2 169 58.6
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 6.0e-44 181.4 171 58.5
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 7.8e-44 181.0 162 56.8
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.3e-43 179.5 175 53.7
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 8.7e-43 177.6 167 56.3
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.9e-42 176.4 176 52.8
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.9e-42 176.4 167 56.9
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 2.5e-42 176.0 173 52.6
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 1.3e-41 173.7 170 57.6
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.3e-41 173.7 170 57.6
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 2.1e-41 172.9 169 53.8
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 2.1e-41 172.9 163 58.9
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 2.8e-41 172.6 174 55.7
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 6.2e-41 171.4 165 59.4
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 6.2e-41 171.4 162 58.6
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 8.1e-41 171.0 135 60.7
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 1.1e-40 170.6 168 57.1
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 1.4e-40 170.2 162 56.2
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 2.4e-40 169.5 173 56.6
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 2.4e-40 169.5 175 50.9
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 4.0e-40 168.7 174 54.0
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 5.3e-40 168.3 171 54.4
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 5.3e-40 168.3 136 61.0
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 5.3e-40 168.3 136 61.0
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 5.3e-40 168.3 183 54.1
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 5.3e-40 168.3 171 53.2
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 6.9e-40 167.9 167 56.9
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.5e-39 166.8 136 59.6
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 3.4e-39 165.6 140 58.6
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 3.4e-39 165.6 191 50.8
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 5.8e-39 164.9 139 59.0
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 7.6e-39 164.5 133 63.2
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 7.6e-39 164.5 165 55.8
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 1.3e-38 163.7 174 55.7
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 2.2e-38 162.9 147 59.2
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 2.2e-38 162.9 170 52.4
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 2.9e-38 162.5 169 52.7
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.9e-38 162.5 175 56.0
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 8.4e-38 161.0 164 50.0
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.9e-37 159.8 164 50.0
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.9e-37 159.8 164 50.0
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.4e-37 159.5 163 55.2
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 4.2e-37 158.7 169 52.1
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 7.1e-37 157.9 168 50.6
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 1.2e-36 157.1 171 48.5
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 1.2e-36 157.1 171 48.5
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.6e-36 156.8 136 56.6
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 3.5e-36 155.6 165 49.7
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 4.6e-36 155.2 132 57.6
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.3e-35 153.7 169 50.9
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 4.3e-34 148.7 130 56.9
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 5.6e-34 148.3 132 57.6
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 9.6e-34 147.5 162 48.8
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 1.6e-33 146.7 127 55.1
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 2.4e-32 142.9 135 54.8
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 2.4e-32 142.9 127 56.7
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 2.4e-32 142.9 145 50.3
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 2.4e-32 142.9 132 55.3
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 3.2e-29 132.5 83 66.3
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.0e-27 127.5 82 69.5
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 8.7e-27 124.4 76 72.4
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 2.5e-26 122.9 104 52.9
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 2.0e-23 113.2 177 39.5
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.3e-22 110.5 63 69.8
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 4.6e-20 102.1 68 61.8
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 4.3e-18 95.5 153 41.2
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 1.1e-16 90.9 71 57.7
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 2.4e-16 89.7 121 40.5
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 4.1e-16 89.0 58 70.7
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 1.0e-14 84.3 45 73.3
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 1.3e-14 84.0 47 70.2
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 5.0e-14 82.0 42 73.8
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 6.5e-14 81.6 93 47.3
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 8.4e-14 81.3 43 69.8
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 8.4e-14 81.3 135 44.4
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 2.5e-13 79.7 44 72.7
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 4.2e-13 79.0 73 46.6
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.7e-12 76.3 42 76.2
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 1.8e-11 73.6 64 51.6
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 1.1e-08 64.3 133 39.8
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 3.1e-08 62.8 114 32.5


User provided reference genes

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