Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 7.9e-73 276.9 133 100.0
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.4e-66 256.1 135 93.3
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.4e-66 256.1 135 93.3
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.4e-66 256.1 135 93.3
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.2e-66 255.0 135 92.6
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 7.9e-65 250.4 135 91.9
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.0e-64 248.4 135 90.4
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.7e-63 244.2 135 86.7
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.1e-61 238.4 135 85.2
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 4.5e-60 234.6 135 84.4
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 4.5e-60 234.6 135 83.7
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 7.7e-60 233.8 135 80.7
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.3e-59 233.0 135 83.7
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.2e-59 232.3 135 80.0
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 2.2e-59 232.3 135 81.5
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 6.5e-59 230.7 135 82.2
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 6.5e-59 230.7 135 82.2
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 6.5e-59 230.7 135 82.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.5e-59 230.3 135 80.7
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 2.5e-58 228.8 135 81.5
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.5e-58 227.6 135 78.5
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 9.4e-58 226.9 135 80.7
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 9.4e-58 226.9 135 79.3
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 9.4e-58 226.9 135 79.3
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.2e-57 226.5 135 80.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.6e-57 226.1 135 78.5
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.6e-57 226.1 135 80.7
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 2.7e-57 225.3 135 79.3
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 3.6e-57 224.9 135 77.0
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.6e-57 224.6 135 77.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 6.1e-57 224.2 134 80.6
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.0e-56 223.4 135 80.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.0e-56 223.4 135 78.5
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.4e-56 223.0 135 79.3
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.4e-56 223.0 135 79.3
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 1.8e-56 222.6 135 78.5
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.3e-56 222.2 132 78.0
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.3e-56 222.2 132 78.0
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 2.3e-56 222.2 132 78.0
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.3e-56 222.2 135 78.5
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 3.0e-56 221.9 135 77.8
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 5.1e-56 221.1 135 79.3
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 5.1e-56 221.1 135 77.0
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 6.7e-56 220.7 130 80.0
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 6.7e-56 220.7 134 79.1
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 6.7e-56 220.7 135 78.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.1e-55 219.9 135 78.5
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.1e-55 219.9 135 78.5
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.1e-55 219.9 135 78.5
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.1e-55 219.9 135 78.5
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 2.0e-55 219.2 134 78.4
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 2.0e-55 219.2 134 79.1
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.5e-55 218.8 134 76.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.5e-55 218.8 135 77.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 2.5e-55 218.8 135 76.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.3e-55 218.4 135 77.0
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.3e-55 218.4 135 77.0
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 4.3e-55 218.0 134 77.6
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.7e-55 217.6 135 77.8
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.7e-55 217.6 135 77.8
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.7e-55 217.6 135 77.8
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 7.4e-55 217.2 135 77.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 9.7e-55 216.9 134 77.6
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.3e-54 216.5 135 77.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.3e-54 216.5 135 77.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.3e-54 216.5 135 76.3
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.3e-54 216.5 135 77.0
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.7e-54 216.1 135 76.3
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.2e-54 215.7 134 78.4
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.8e-54 215.3 135 74.8
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.8e-54 215.3 134 78.4
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 3.7e-54 214.9 134 75.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 4.8e-54 214.5 135 74.8
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 4.8e-54 214.5 135 76.3
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 4.8e-54 214.5 134 77.6
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 4.8e-54 214.5 134 76.9
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 6.3e-54 214.2 134 77.6
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 6.3e-54 214.2 135 74.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.1e-53 213.4 134 76.9
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.4e-53 213.0 135 75.6
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.8e-53 212.6 134 77.6
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.8e-53 212.6 134 77.6
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.4e-53 212.2 134 74.6
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 3.1e-53 211.8 135 73.3
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 6.9e-53 210.7 135 72.6
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 6.9e-53 210.7 134 75.4
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 9.1e-53 210.3 135 74.8
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 9.1e-53 210.3 135 73.3
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.5e-52 209.5 134 75.4
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 2.0e-52 209.1 135 74.8
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 3.4e-52 208.4 135 74.1
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.4e-52 208.4 135 73.3
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 4.5e-52 208.0 134 73.9
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 7.7e-52 207.2 134 73.9
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.0e-51 206.8 135 73.3
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.0e-51 206.8 135 72.6
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.0e-51 206.8 135 72.6
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.2e-51 205.7 135 71.1
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 2.2e-51 205.7 135 73.3
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.9e-51 205.3 135 72.6
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 2.9e-51 205.3 135 72.6
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.9e-51 205.3 135 72.6
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 3.8e-51 204.9 134 75.4
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 6.5e-51 204.1 135 72.6
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 8.5e-51 203.8 134 71.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 8.5e-51 203.8 135 71.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-50 202.6 134 73.1
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.9e-50 202.6 135 73.3
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.1e-49 199.1 135 70.4
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.7e-49 198.0 135 71.1
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.4e-48 196.4 135 67.4
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.3e-48 195.7 135 68.1
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 4.4e-47 191.4 123 74.0
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.4e-47 191.4 134 67.9
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.2e-46 189.1 134 65.7
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.7e-46 188.3 135 68.9
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 6.3e-46 187.6 130 70.8
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 2.4e-45 185.7 135 69.6
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 7.0e-45 184.1 134 65.7
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 9.1e-45 183.7 134 64.9
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 7.7e-44 180.6 103 82.5
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.3e-43 179.9 104 81.7
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.2e-43 179.1 107 76.6
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.8e-43 178.3 134 64.2
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.5e-43 177.2 134 63.4
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.4e-40 169.9 132 64.4
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.0e-40 168.7 134 61.2
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 4.4e-39 164.9 125 62.4
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 9.7e-39 163.7 130 62.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 4.1e-37 158.3 133 57.9
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 4.5e-36 154.8 131 58.8
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.3e-35 153.3 130 58.5
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.9e-34 149.4 135 57.8
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.9e-34 149.4 129 55.0
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 6.3e-30 134.4 129 52.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.1e-29 132.1 133 54.1
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.5e-28 128.6 83 71.1
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.5e-26 123.2 135 47.4
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 6.3e-22 107.8 60 83.3
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.8e-21 106.3 60 85.0
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.9e-19 99.0 60 75.0
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 3.6e-17 92.0 125 40.0
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.3e-14 83.6 66 65.2
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.2e-07 60.5 122 32.0


User provided reference genes

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