Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g28522 Fragaria vesca HOM05D046755 ORTHO05D198202 1.2e-65 253.1 131 100.0
FvH4_2g00862 Fragaria vesca HOM05D046755 ORTHO05D196670 3.1e-21 105.5 129 51.2
TWI74G0630 Tripterygium wilfordii HOM05D001906 ORTHO05D002083 2.3e-08 62.8 36 80.6
TAR623G1039 Trochodendron aralioides HOM05D001906 ORTHO05D002083 2.3e-08 62.8 36 80.6
RcHm_v2.0_Chr3g0472851 Rosa chinensis HOM05D001906 ORTHO05D002083 3.0e-08 62.4 36 80.6
TWI77G0619 Tripterygium wilfordii HOM05D001906 ORTHO05D002083 3.9e-08 62.0 36 83.3
Nn2g14103 Nelumbo nucifera HOM05D001906 ORTHO05D002083 5.1e-08 61.6 36 77.8
Dinv31666 Davidia involucrata HOM05D001906 ORTHO05D002083 6.7e-08 61.2 36 83.3
Duzib128G0169 Durio zibethinus HOM05D001906 ORTHO05D002083 6.7e-08 61.2 36 83.3
FvH4_6g18360 Fragaria vesca HOM05D001906 ORTHO05D002083 6.7e-08 61.2 36 77.8
Lj3A999T42 Lonicera japonica HOM05D001906 ORTHO05D002083 6.7e-08 61.2 36 83.3
CiPaw.09G011600 Carya illinoinensis HOM05D001906 ORTHO05D002083 8.7e-08 60.8 36 80.6
COL.COLO4_29777 Corchorus olitorius HOM05D001906 ORTHO05D002083 8.7e-08 60.8 36 80.6
Haze_19583 Corylus avellana HOM05D001906 ORTHO05D002083 8.7e-08 60.8 36 80.6
Gorai.004G115000 Gossypium raimondii HOM05D001906 ORTHO05D002083 1.1e-07 60.5 36 80.6
Medtr7g104270 Medicago truncatula HOM05D001906 ORTHO05D002083 1.1e-07 60.5 36 77.8
Psat3g034440 Pisum sativum HOM05D001906 ORTHO05D002083 1.1e-07 60.5 36 75.0
Ca_08990_v3 Cicer arietinum L. HOM05D001906 ORTHO05D002083 1.5e-07 60.1 36 75.0
Cpa.g.sc5.45 Carica papaya HOM05D001906 ORTHO05D002083 1.9e-07 59.7 36 77.8
TPR.G17656 Trifolium pratense HOM05D001906 ORTHO05D002083 1.9e-07 59.7 36 77.8
Manes.09G056900 Manihot esculenta HOM05D001906 ORTHO05D002083 2.5e-07 59.3 36 80.6
FAN05G0944 Fragaria x ananassa HOM05D001906 ORTHO05D002083 3.3e-07 58.9 36 75.0
FAN05G4112 Fragaria x ananassa HOM05D001906 ORTHO05D002083 3.3e-07 58.9 36 75.0
Gohir.A09G138400 Gossypium hirsutum HOM05D001906 ORTHO05D002083 3.3e-07 58.9 36 80.6
Lj1g0000699 Lotus japonicus HOM05D001906 ORTHO05D002083 3.3e-07 58.9 36 77.8
MD14G1019900 Malus domestica HOM05D001906 ORTHO05D002083 5.7e-07 58.2 36 75.0
Prupe.7G113700 Prunus persica HOM05D001906 ORTHO05D002083 5.7e-07 58.2 36 75.0
Thecc.05G086000 Theobroma cacao HOM05D001906 ORTHO05D002083 5.7e-07 58.2 36 77.8
Aqoxy4G02818 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 7.4e-07 57.8 36 75.0
Lalb_Chr01g0018241 Lupinus albus HOM05D001906 ORTHO05D002083 7.4e-07 57.8 36 72.2
PSO384G3031 Papaver somniferum HOM05D001906 ORTHO05D002083 7.4e-07 57.8 36 72.2
EL10Ac7g16942 Beta vulgaris HOM05D001906 ORTHO05D002083 9.7e-07 57.4 36 77.8
FAN14G0772 Fragaria x ananassa HOM05D001906 ORTHO05D002083 9.7e-07 57.4 36 75.0
Gohir.D09G136200 Gossypium hirsutum HOM05D001906 ORTHO05D002083 9.7e-07 57.4 36 77.8
Gorai.006G156300 Gossypium raimondii HOM05D001906 ORTHO05D002083 9.7e-07 57.4 36 77.8
MD12G1022900 Malus domestica HOM05D001906 ORTHO05D002083 9.7e-07 57.4 36 75.0
Nn6g34966 Nelumbo nucifera HOM05D001906 ORTHO05D002083 1.3e-06 57.0 36 72.2
Phvul.001G188700 Phaseolus vulgaris HOM05D001906 ORTHO05D002083 1.3e-06 57.0 36 72.2
Sabra06G0063000 Salix brachista HOM05D001906 ORTHO05D002083 1.3e-06 57.0 36 75.0
SalBow3G1480 Salvia bowleyana HOM05D001906 ORTHO05D002083 1.3e-06 57.0 36 72.2
Aa31LG5G21460 Aethionema arabicum HOM05D001906 ORTHO05D002083 1.6e-06 56.6 36 77.8
arahy.Tifrunner.gnm1.ann1.BL4VV5 Arachis hypogaea HOM05D001906 ORTHO05D002083 1.6e-06 56.6 36 72.2
arahy.Tifrunner.gnm1.ann1.Z5G8E0 Arachis hypogaea HOM05D001906 ORTHO05D002083 1.6e-06 56.6 36 72.2
Glyma.19G193700 Glycine max HOM05D001906 ORTHO05D002083 1.6e-06 56.6 36 72.2
PSO339G1652 Papaver somniferum HOM05D001906 ORTHO05D002083 1.6e-06 56.6 36 69.4
Cfa016583 Carpinus fangiana HOM05D001906 ORTHO05D002083 2.2e-06 56.2 36 75.0
Eucgr.A01518 Eucalyptus grandis HOM05D001906 ORTHO05D002083 2.2e-06 56.2 36 75.0
Glyma.03G193800 Glycine max HOM05D001906 ORTHO05D002083 2.2e-06 56.2 36 69.4
Gohir.A04G064200 Gossypium hirsutum HOM05D001906 ORTHO05D002083 2.2e-06 56.2 36 75.0
ClCG04G009950 Citrullus lanatus HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 69.4
Ciclev10012143m.g Citrus clementina HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 72.2
CsaV3_6G040600 Cucumis sativus L. HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 69.4
DCAR_020763 Daucus carota HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 77.8
Migut.J01058 Erythranthe guttata HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 72.2
QL07p039478 Quercus lobata HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 72.2
Hund04001 Selenicereus undatus HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 72.2
GSVIVG01033806001 Vitis vinifera HOM05D001906 ORTHO05D002083 2.8e-06 55.8 36 72.2
PGSC0003DMG400008962 Solanum tuberosum HOM05D001906 ORTHO05D002083 3.7e-06 55.5 36 75.0
vmacro07395 Vaccinium macrocarpon HOM05D001906 ORTHO05D002083 3.7e-06 55.5 63 49.2
Atru.chr8.1575 Acer truncatum HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 69.4
Actinidia05443 Actinidia chinensis HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 72.2
AL4G32440 Arabidopsis lyrata HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
AT2G36310 Arabidopsis thaliana HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
A03p20050 Brassica napus HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
BraA03t11255Z Brassica rapa HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
CANSAT80G0920 Cannabis sativa HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 72.2
CARHR130600 Cardamine hirsuta HOM05D001906 ORTHO05D002083 4.8e-06 55.1 35 77.1
Gohir.D04G101600 Gossypium hirsutum HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
Gorai.009G404900 Gossypium raimondii HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
MBI01_g46731_MAGBIO Magnolia biondii HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 72.2
Nitab4.5_0000794g0010 Nicotiana tabacum HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
Os08g0557900 Oryza sativa ssp. japonica HOM05D001906 ORTHO05D002083 4.8e-06 55.1 60 51.7
Rhsim03G0077300 Rhododendron simsii HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 66.7
Sp4g18550 Schrenkiella parvula HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
Solyc09g009690.3 Solanum lycopersicum HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
Sopen09g004450 Solanum pennellii HOM05D001906 ORTHO05D002083 4.8e-06 55.1 36 75.0
SGA_v2.0_scaffold75G24761 Striga asiatica HOM05D001906 ORTHO05D002083 4.8e-06 55.1 48 60.4
Aa31LG10G7810 Aethionema arabicum HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 72.2
BcaB02g09362 Brassica carinata HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 72.2
BcaC01g05666 Brassica carinata HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 72.2
C03p23490 Brassica napus HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 72.2
BolC3t14745H Brassica oleracea HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 72.2
HPP92_013807 Vanilla planifolia HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 69.4
Zm00001eb176090 Zea mays HOM05D001906 ORTHO05D002083 6.3e-06 54.7 36 72.2
Cfa012793 Carpinus fangiana HOM05D001906 ORTHO05D002083 8.2e-06 54.3 36 72.2
AUR62033515 Chenopodium quinoa HOM05D001906 ORTHO05D002083 8.2e-06 54.3 36 72.2
Sc20g0006200 Simmondsia chinensis HOM05D001906 ORTHO05D002083 8.2e-06 54.3 36 69.4
Zm00001eb096030 Zea mays HOM05D001906 ORTHO05D002083 8.2e-06 54.3 36 72.2


User provided reference genes

Program Settings