Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 8.1e-104 381.3 363 100.0
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-39 167.9 278 67.6
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.6e-33 147.1 133 63.2
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 6.3e-32 142.5 133 61.7
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.7e-22 110.5 174 44.8
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.9e-21 107.1 121 54.5
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.3e-20 103.6 131 55.7
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.3e-20 103.6 91 69.2
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 9.5e-20 102.1 91 68.1
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 9.5e-20 102.1 91 68.1
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 9.5e-20 102.1 91 68.1
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 9.5e-20 102.1 91 68.1
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.1e-19 100.9 91 68.1
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 2.1e-19 100.9 91 67.0
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 3.6e-19 100.1 91 67.0
FAN27G3187 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.1e-19 99.4 128 49.2
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 6.1e-19 99.4 91 67.0
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 8.0e-19 99.0 91 65.9
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 8.0e-19 99.0 91 63.7
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 8.0e-19 99.0 91 65.9
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 60.4
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 1.8e-18 97.8 91 64.8
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.3e-18 97.4 91 65.9
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.3e-18 97.4 91 65.9
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 2.3e-18 97.4 91 64.8
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 2.3e-18 97.4 91 63.7
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 3.1e-18 97.1 91 64.8
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 3.1e-18 97.1 91 63.7
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 3.1e-18 97.1 91 64.8
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 3.1e-18 97.1 91 63.7
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 4.0e-18 96.7 91 63.7
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 4.0e-18 96.7 91 63.7
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 4.0e-18 96.7 91 63.7
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 4.0e-18 96.7 91 63.7
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 4.0e-18 96.7 91 64.8
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 5.2e-18 96.3 91 64.8
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 5.2e-18 96.3 91 62.6
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.2e-18 96.3 129 49.6
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 5.2e-18 96.3 91 63.7
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 6.8e-18 95.9 91 63.7
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 6.8e-18 95.9 91 63.7
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 6.8e-18 95.9 91 62.6
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 6.8e-18 95.9 91 63.7
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 64.8
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 8.9e-18 95.5 92 63.0
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 8.9e-18 95.5 92 63.0
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 64.8
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 8.9e-18 95.5 92 63.0
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 8.9e-18 95.5 92 63.0
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 62.6
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 63.7
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 63.7
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 63.7
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 8.9e-18 95.5 91 63.7
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 62.6
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 1.2e-17 95.1 91 63.7
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 1.5e-17 94.7 92 59.8
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 1.5e-17 94.7 91 62.6
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.5e-17 94.7 91 63.7
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.5e-17 94.7 91 63.7
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 1.5e-17 94.7 91 63.7
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 1.5e-17 94.7 91 62.6
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 1.5e-17 94.7 91 62.6
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 2.0e-17 94.4 91 62.6
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 2.0e-17 94.4 91 61.5
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.0e-17 94.4 91 62.6
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 2.6e-17 94.0 91 62.6
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 2.6e-17 94.0 91 62.6
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 2.6e-17 94.0 91 62.6
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 2.6e-17 94.0 91 60.4
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 2.6e-17 94.0 91 61.5
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 3.4e-17 93.6 91 62.6
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 5.8e-17 92.8 91 60.4
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 5.8e-17 92.8 91 61.5
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 7.5e-17 92.4 91 61.5
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 7.5e-17 92.4 91 62.6
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 7.5e-17 92.4 91 62.6
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 7.5e-17 92.4 91 60.4
FvH4_7g00590 Fragaria vesca HOM05D003632 ORTHO05D046112 7.5e-17 92.4 72 65.3
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 7.5e-17 92.4 91 62.6
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 7.5e-17 92.4 91 61.5
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 7.5e-17 92.4 100 56.0
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 9.8e-17 92.0 92 60.9
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 9.8e-17 92.0 91 62.6
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 1.3e-16 91.7 91 61.5
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 1.7e-16 91.3 91 58.2
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 1.7e-16 91.3 91 62.6
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 2.2e-16 90.9 91 60.4
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 2.2e-16 90.9 91 60.4
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 2.2e-16 90.9 91 61.5
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 2.2e-16 90.9 91 58.2
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 2.9e-16 90.5 91 59.3
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 3.7e-16 90.1 91 60.4
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 4.9e-16 89.7 92 58.7
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 8.3e-16 89.0 91 59.3
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 1.1e-15 88.6 91 58.2
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 1.9e-15 87.8 91 60.4
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.0e-14 82.8 121 47.1
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 6.0e-14 82.8 90 55.6
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 3.0e-13 80.5 84 58.3
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 3.9e-13 80.1 91 57.1
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 3.9e-13 80.1 91 57.1
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 5.0e-13 79.7 111 46.8
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 8.6e-13 79.0 91 57.1
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 8.6e-13 79.0 91 52.7
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 5.6e-12 76.3 91 52.7
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 5.6e-12 76.3 91 51.6
FAN10G1660 Fragaria x ananassa HOM05D003632 ORTHO05D046112 1.8e-10 71.2 60 65.0
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 2.3e-10 70.9 91 47.3
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.3e-10 70.9 46 80.4
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 4.0e-10 70.1 40 87.5
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.4e-09 67.0 40 87.5
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 4.4e-09 66.6 40 82.5
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.1e-07 62.0 40 77.5
FAN10G3129 Fragaria x ananassa HOM05D003632 ORTHO05D201925 1.9e-07 61.2 34 76.5
FvH4_7g01860 Fragaria vesca HOM05D003632 ORTHO05D046128 2.4e-07 60.8 41 73.2
FvH4_7g00733 Fragaria vesca HOM05D003632 ORTHO05D198156 3.2e-07 60.5 38 76.3
PRCOL_00001043 Prasinoderma coloniale HOM05D003632 ORTHO05D005497 4.1e-07 60.1 93 38.7
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 4.1e-07 60.1 40 72.5
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.4e-07 59.7 36 86.1
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 7.0e-07 59.3 40 77.5
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 1.2e-06 58.5 91 48.4
FvH4_7g05200 Fragaria vesca HOM05D003632 ORTHO05D196677 2.1e-06 57.8 46 60.9
FAN03G0989 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.8e-06 55.8 39 71.8


User provided reference genes

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