Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.8e-159 565.8 284 100.0
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.1e-155 552.4 284 97.9
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.1e-154 547.7 284 97.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.8e-152 541.2 284 96.1
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.7e-136 488.4 254 96.5
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 4.2e-116 421.8 316 75.0
FAN28G1691 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.0e-62 241.9 137 91.2
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.2e-57 227.6 323 49.8
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 3.8e-56 222.6 314 48.1
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.6e-54 217.2 306 48.7
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 9.6e-44 181.4 320 43.1
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 2.1e-43 180.3 319 43.3
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.7e-43 179.5 321 43.3
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 8.1e-43 178.3 296 41.6
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 3.1e-42 176.4 303 43.2
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 7.6e-41 171.8 302 41.7
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 4.9e-40 169.1 314 41.1
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 8.4e-40 168.3 319 37.9
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 1.1e-39 167.9 323 41.5
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 1.1e-39 167.9 323 41.5
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 3.2e-39 166.4 309 45.0
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 5.5e-39 165.6 295 42.4
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 9.3e-39 164.9 314 40.1
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.6e-38 162.5 325 41.2
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 5.1e-37 159.1 324 40.1
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 3.3e-36 156.4 309 39.5
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 7.4e-36 155.2 327 41.3
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 9.6e-36 154.8 298 42.6
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 4.8e-35 152.5 306 39.2
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 8.2e-35 151.8 300 38.3
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.8e-34 150.6 307 39.4
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.4e-34 150.2 296 38.5
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.4e-34 150.2 298 36.9
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 4.1e-34 149.4 316 38.9
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 5.3e-34 149.1 312 38.8
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.5e-33 147.5 323 42.4
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 4.5e-33 146.0 293 37.5
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 4.5e-33 146.0 302 38.1
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 7.6e-33 145.2 314 38.9
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 1.0e-32 144.8 306 38.9
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.7e-32 144.1 315 36.2
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 2.2e-32 143.7 300 38.3
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 3.8e-32 142.9 298 40.3
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 6.5e-32 142.1 300 37.7
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 6.5e-32 142.1 290 41.7
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 8.5e-32 141.7 304 38.5
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 8.5e-32 141.7 312 38.5
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 3.2e-31 139.8 305 40.0
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 4.2e-31 139.4 297 37.0
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.6e-30 137.5 297 37.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.6e-30 137.5 312 37.8
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 2.7e-30 136.7 283 36.7
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.7e-30 136.7 289 38.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 3.6e-30 136.3 311 36.3
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 4.6e-30 136.0 292 38.0
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.0e-29 134.8 305 37.0
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.3e-29 134.4 292 37.7
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.8e-29 134.0 289 36.3
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.8e-29 134.0 304 38.5
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 3.0e-29 133.3 307 37.5
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 3.0e-29 133.3 307 41.7
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.1e-29 132.5 271 43.2
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 7.4e-28 128.6 318 34.3
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 7.4e-28 128.6 297 36.0
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 9.7e-28 128.3 296 37.5
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 9.7e-28 128.3 284 35.2
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 9.7e-28 128.3 287 40.1
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.6e-27 127.5 310 34.8
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.6e-27 127.5 310 38.7
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 3.7e-27 126.3 302 35.4
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 3.7e-27 126.3 302 36.4
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.8e-27 125.9 261 37.5
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 4.8e-27 125.9 307 36.5
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 4.8e-27 125.9 298 36.6
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.1e-26 124.8 309 35.9
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.1e-26 124.8 317 35.0
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.4e-26 124.4 288 34.7
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.4e-26 123.6 324 35.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 4.1e-26 122.9 290 34.1
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.3e-26 122.5 296 35.1
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 6.9e-26 122.1 286 37.8
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.5e-25 119.4 294 33.3
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-24 117.9 288 34.4
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-24 117.9 295 33.9
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.3e-24 117.9 296 34.5
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 1.3e-24 117.9 295 35.6
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-24 117.9 291 38.1
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.7e-24 117.5 291 34.7
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.2e-24 117.1 293 33.4
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.2e-24 117.1 299 36.8
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.8e-24 116.3 285 35.4
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.0e-24 115.9 305 35.4
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 6.5e-24 115.5 310 33.9
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.5e-24 115.2 299 36.1
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.1e-23 114.8 286 32.2
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.1e-23 114.8 301 34.6
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.1e-23 114.8 327 34.6
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-23 114.4 298 32.9
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 3.2e-23 113.2 302 34.4
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 5.5e-23 112.5 299 33.4
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 7.2e-23 112.1 170 48.2
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 9.4e-23 111.7 292 36.0
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.6e-22 110.9 301 33.6
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-22 110.5 288 34.4
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 4.6e-22 109.4 290 33.1
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 4.6e-22 109.4 290 33.1
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 4.6e-22 109.4 290 33.1
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 4.6e-22 109.4 290 33.1
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.0e-21 108.2 295 32.9
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.4e-21 107.8 187 39.0
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.4e-21 107.8 301 34.2
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 1.8e-21 107.5 294 33.7
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.7e-21 105.5 192 37.0
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 6.7e-21 105.5 293 32.4
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 8.8e-21 105.1 255 33.7
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 8.8e-21 105.1 306 33.0
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 8.8e-21 105.1 314 34.7
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.1e-20 104.8 307 35.2
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.1e-20 104.8 299 34.8
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.6e-20 103.6 253 33.6
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.6e-20 103.6 292 35.3
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 3.3e-20 103.2 184 39.1
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 4.3e-20 102.8 291 34.4
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 4.3e-20 102.8 297 32.3
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 5.7e-20 102.4 291 34.0
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.7e-20 102.4 307 32.2
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 9.7e-20 101.7 133 45.9
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 9.7e-20 101.7 291 34.0
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.7e-19 100.9 186 41.4
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-19 100.5 297 33.3
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 2.8e-19 100.1 296 33.4
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.8e-19 100.1 295 34.6
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 2.8e-19 100.1 296 33.4
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 3.7e-19 99.8 198 34.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 3.7e-19 99.8 294 32.7
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 4.8e-19 99.4 292 32.9
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 6.3e-19 99.0 95 53.7
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 8.2e-19 98.6 294 32.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 8.2e-19 98.6 294 33.0
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 8.2e-19 98.6 295 32.5
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 8.2e-19 98.6 271 36.9
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.1e-18 98.2 299 32.4
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.1e-18 98.2 258 34.9
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.4e-18 97.1 308 33.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.1e-18 96.7 318 30.5
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 6.9e-18 95.5 292 29.8
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.2e-17 94.7 279 29.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.6e-17 93.6 244 35.2
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.3e-16 91.3 305 32.5
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.3e-16 91.3 165 41.2
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.7e-16 90.9 301 32.6
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 2.2e-16 90.5 295 30.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 6.5e-16 89.0 178 40.4
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 1.4e-15 87.8 253 35.6
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.4e-15 87.8 282 29.8
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 3.2e-15 86.7 291 30.9
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.2e-15 86.3 291 32.3
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-14 84.3 114 46.5
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 3.6e-14 83.2 87 48.3
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 4.7e-14 82.8 281 33.1
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.8e-13 80.9 289 32.5
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 2.3e-13 80.5 288 31.2
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 6.7e-13 79.0 291 28.5
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 8.8e-13 78.6 290 31.0
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 5.7e-12 75.9 103 40.8
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.7e-11 74.3 282 29.1
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 3.7e-11 73.2 296 29.4
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 4.8e-11 72.8 280 28.2
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 8.2e-11 72.0 307 29.3
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 4.1e-10 69.7 282 28.0
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.6e-09 67.8 92 42.4
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 3.5e-09 66.6 289 30.1
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 7.7e-09 65.5 279 26.9
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.8e-08 63.2 63 52.4
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 5.0e-08 62.8 90 45.6
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 5.0e-08 62.8 160 31.9
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 6.5e-08 62.4 286 27.3
Zm00001eb160980 Zea mays HOM05D015210 ORTHO05D003958 5.5e-07 59.3 116 42.2
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 1.6e-06 57.8 254 27.2
Zm00001eb160920 Zea mays HOM05D015210 ORTHO05D003958 2.1e-06 57.4 93 43.0
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.7e-06 57.0 144 33.3
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.7e-06 56.2 284 28.2


User provided reference genes

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