Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 5.7e-225 783.9 384 100.0
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.2e-218 760.8 384 96.9
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.4e-217 757.7 384 96.9
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.9e-216 755.0 384 96.4
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.6e-214 747.7 406 91.6
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.6e-203 712.6 384 89.8
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 5.3e-170 601.3 392 76.0
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 8.7e-165 583.9 392 74.5
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.5e-164 582.4 395 73.4
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 2.1e-163 579.3 391 74.2
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 2.9e-160 568.9 387 72.6
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 2.7e-158 562.4 391 71.9
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.0e-157 560.5 383 72.1
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.8e-157 559.7 392 72.2
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 8.7e-157 557.4 384 72.4
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.1e-156 557.0 393 71.0
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 4.3e-156 555.1 393 71.5
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.3e-155 553.5 387 71.3
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.1e-154 550.4 391 71.1
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 5.3e-154 548.1 410 69.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 9.0e-154 547.4 393 69.2
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.6e-153 545.8 408 68.4
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.4e-153 545.4 388 70.1
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 3.8e-152 542.0 409 67.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 6.5e-152 541.2 391 68.5
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.4e-151 540.0 389 70.2
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.5e-151 539.3 391 68.8
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.7e-150 535.8 387 69.8
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 3.5e-150 535.4 387 69.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 6.1e-150 534.6 388 68.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 7.9e-150 534.3 391 68.8
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.3e-149 533.5 365 73.2
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-149 533.5 409 66.0
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.3e-149 533.5 387 69.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 3.9e-149 531.9 376 71.3
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 3.9e-149 531.9 388 68.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 6.7e-149 531.2 362 73.2
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.3e-148 528.5 367 71.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 7.4e-148 527.7 391 68.3
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 9.7e-148 527.3 387 67.7
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.6e-147 526.6 393 67.4
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.8e-147 525.8 391 67.3
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 6.3e-147 524.6 390 68.5
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 8.2e-147 524.2 390 67.4
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.4e-146 523.5 393 67.2
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.5e-145 520.0 390 66.4
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.0e-145 519.6 393 67.7
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 2.6e-145 519.2 388 67.5
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 3.4e-145 518.8 390 66.4
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-145 518.8 382 67.5
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 4.5e-145 518.5 390 67.4
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 5.9e-145 518.1 387 66.9
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.3e-144 516.9 386 67.4
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.7e-144 516.5 390 66.2
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.7e-144 516.5 345 73.3
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 2.2e-144 516.2 380 68.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.1e-143 513.8 393 67.7
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.9e-143 513.1 391 66.2
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.9e-143 513.1 392 66.8
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.2e-143 512.3 344 73.3
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 9.4e-143 510.8 391 67.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.2e-142 510.4 391 66.0
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.2e-142 510.4 386 66.8
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.6e-142 510.0 389 66.1
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.7e-142 509.2 399 64.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 1.0e-141 507.3 388 65.7
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 1.1e-140 503.8 390 66.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-140 503.8 390 65.9
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.5e-140 502.7 399 64.4
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.8e-139 499.2 390 65.4
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 9.1e-138 494.2 392 64.3
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.2e-137 493.8 392 65.1
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.5e-137 493.4 390 64.9
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 3.4e-137 492.3 378 66.7
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.0e-136 490.7 391 65.5
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.7e-136 490.0 415 61.7
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 6.5e-136 488.0 392 64.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 8.5e-136 487.6 391 63.4
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.4e-135 486.9 366 67.2
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.9e-135 486.5 345 70.1
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.2e-135 485.7 390 64.6
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.2e-135 485.7 390 64.6
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 3.2e-135 485.7 357 68.3
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 3.9e-133 478.8 391 62.9
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 4.4e-132 475.3 329 70.2
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 8.2e-131 471.1 385 63.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.6e-129 466.8 389 63.2
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.6e-129 466.8 377 63.9
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.6e-126 455.7 389 61.7
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 6.1e-126 454.9 359 64.9
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.4e-125 453.8 425 58.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 2.2e-123 446.4 415 57.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.6e-121 440.3 349 65.3
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 4.8e-115 418.7 385 56.4
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.1e-114 417.5 337 63.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 3.8e-112 409.1 322 65.5
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.1e-111 407.5 263 73.4
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 8.0e-110 401.4 251 74.9
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.8e-109 400.2 344 59.9
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.0e-101 372.9 323 60.1
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.7e-96 357.1 383 51.7
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 7.3e-95 351.7 262 67.9
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 8.9e-93 344.7 322 55.6
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 7.0e-90 335.1 262 62.6
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.3e-88 330.1 201 77.1
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.2e-86 324.3 193 75.6
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 5.1e-80 302.4 163 86.5
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 2.3e-77 293.5 223 66.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.1e-74 284.6 279 49.5
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.6e-71 271.6 130 99.2
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 7.6e-68 261.9 193 68.4
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.2e-65 254.6 188 63.8
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.7e-64 250.8 204 59.8
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 9.0e-53 211.8 234 45.7
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 8.4e-51 205.3 197 48.7
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 5.5e-50 202.6 113 77.9
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 8.2e-46 188.7 124 75.0
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.9e-43 180.3 185 54.1
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 3.0e-40 170.2 133 60.2
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 5.1e-40 169.5 131 61.8
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 3.3e-39 166.8 133 59.4
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.2e-33 148.3 243 37.9
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 2.1e-33 147.5 200 42.0
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 2.4e-29 134.0 84 73.8
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.2e-27 127.5 162 48.1
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 4.2e-26 123.2 73 78.1
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 5.5e-26 122.9 177 44.1
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.0e-24 117.1 74 70.3
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 3.3e-23 113.6 109 51.4
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.4e-23 112.5 63 77.8
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.7e-20 102.4 98 58.2
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.1e-18 98.6 121 47.1
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.1e-13 82.0 94 52.1
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 3.1e-13 80.5 45 77.8
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 9.1e-13 79.0 105 43.8
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 2.2e-11 74.3 45 71.1
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-09 68.2 64 57.8
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 3.7e-06 57.0 34 67.6


User provided reference genes

Program Settings