Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.6e-121 437.6 215 100.0
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.1e-120 435.6 215 99.5
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 4.9e-117 424.5 215 98.1
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 7.7e-86 320.9 207 77.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.4e-50 203.8 213 50.7
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.3e-48 197.2 220 46.4
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.1e-47 194.1 167 56.9
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.3e-45 187.2 222 49.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.1e-44 184.1 225 43.1
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 7.3e-44 181.4 203 47.8
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.3e-42 176.4 160 54.4
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.1e-42 176.0 206 45.6
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.1e-42 176.0 206 45.6
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 3.1e-42 176.0 190 49.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 3.4e-41 172.6 204 44.1
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 7.5e-41 171.4 202 45.5
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.7e-40 170.2 206 45.6
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.9e-40 168.7 200 46.5
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 4.9e-40 168.7 163 53.4
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 6.4e-40 168.3 200 46.5
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.4e-39 167.2 163 52.8
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 5.4e-39 165.2 201 43.3
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 5.4e-39 165.2 201 43.3
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 5.4e-39 165.2 200 43.5
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 7.1e-39 164.9 163 52.8
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 7.1e-39 164.9 223 43.0
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 9.2e-39 164.5 201 42.8
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 9.2e-39 164.5 201 42.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.2e-38 164.1 203 42.4
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-38 164.1 201 42.3
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.6e-38 163.7 231 42.0
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.1e-38 163.3 213 43.2
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.7e-38 162.9 216 45.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.5e-38 162.5 163 52.8
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.6e-38 162.2 161 52.8
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.8e-38 161.4 203 44.3
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.7e-37 160.2 162 49.4
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.3e-37 159.8 169 50.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.3e-37 159.8 164 53.0
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.9e-37 159.1 163 52.1
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.6e-37 158.3 163 51.5
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 8.6e-37 157.9 163 47.9
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 8.6e-37 157.9 166 50.0
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.6e-37 157.9 163 49.7
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.5e-36 157.1 163 49.1
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.5e-36 157.1 239 41.4
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.9e-36 156.8 163 49.1
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 1.9e-36 156.8 163 51.5
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 3.3e-36 156.0 162 47.5
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 3.3e-36 156.0 175 45.7
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 5.6e-36 155.2 163 49.7
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 5.6e-36 155.2 203 43.3
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 7.3e-36 154.8 173 48.0
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 7.3e-36 154.8 237 40.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 7.3e-36 154.8 201 41.3
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 9.5e-36 154.5 163 48.5
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.6e-35 153.7 165 49.7
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.1e-35 153.3 178 46.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 2.1e-35 153.3 163 50.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.8e-35 152.9 208 42.8
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.8e-35 152.9 239 41.0
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.6e-35 152.5 163 48.5
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 8.1e-35 151.4 168 47.6
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.1e-34 151.0 189 46.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.1e-34 151.0 189 46.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.4e-34 150.6 163 47.2
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.4e-34 150.6 160 46.9
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 5.2e-34 148.7 174 44.8
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 6.8e-34 148.3 164 44.5
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 8.9e-34 147.9 163 49.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 4.4e-33 145.6 163 44.8
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 5.8e-33 145.2 161 43.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.9e-33 144.4 180 43.9
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.7e-32 143.7 170 44.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 3.8e-32 142.5 199 41.2
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 4.9e-32 142.1 162 46.9
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 6.4e-32 141.7 191 42.9
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.4e-32 141.7 163 46.6
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.4e-31 139.8 156 47.4
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.2e-31 139.4 158 47.5
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 4.1e-31 139.0 185 42.2
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.4e-31 138.7 223 39.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 7.1e-31 138.3 227 37.9
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 9.2e-31 137.9 165 41.8
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-29 134.4 233 38.6
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 1.0e-29 134.4 163 45.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.7e-29 133.7 172 44.2
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 2.3e-29 133.3 175 42.9
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.0e-29 132.9 157 45.2
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 5.1e-29 132.1 154 54.5
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-28 130.6 212 41.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 4.3e-28 129.0 147 44.2
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.3e-28 129.0 210 38.1
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 7.3e-28 128.3 137 50.4
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.1e-27 126.7 169 40.8
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.8e-27 126.3 134 50.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.8e-27 126.3 138 51.4
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 6.2e-27 125.2 175 41.7
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 8.1e-27 124.8 174 42.0
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.8e-26 123.6 92 58.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.5e-25 120.6 163 42.3
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.7e-24 117.1 169 43.8
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.2e-24 116.7 145 43.4
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.9e-24 115.5 142 45.1
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.2e-23 112.8 175 37.7
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-22 110.9 168 42.9
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.0e-21 107.8 156 41.7
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.3e-21 107.5 202 36.1
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.7e-21 104.8 146 44.5
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 8.7e-21 104.8 179 40.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.9e-20 103.6 142 41.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.3e-20 102.8 126 45.2
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.8e-19 99.0 169 34.9
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 8.1e-19 98.2 142 40.1
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-18 97.4 208 35.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.8e-18 97.1 144 39.6
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.3e-18 95.5 142 35.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.9e-18 95.1 180 36.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.2e-17 94.4 147 38.8
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.6e-17 93.2 131 42.7
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.6e-17 93.2 144 37.5
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 4.5e-17 92.4 103 46.6
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 4.5e-17 92.4 109 45.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 5.8e-17 92.0 105 44.8
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 7.6e-17 91.7 117 41.0
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.2e-15 85.9 143 35.7
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.3e-15 84.7 168 32.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 7.9e-14 81.6 143 38.5
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-13 80.5 143 35.7
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.6e-12 75.5 128 38.3
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.4e-12 75.1 114 35.1
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.3e-11 74.3 145 36.6
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.4e-10 70.9 103 39.8
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 3.4e-09 66.2 58 58.6
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 5.8e-09 65.5 59 45.8


User provided reference genes

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