Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27811 Fragaria vesca HOM05D001826 ORTHO05D015538 1.8e-32 142.1 80 100.0
FAN19G2561 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.8e-32 142.1 80 100.0
FAN23G1496 Fragaria x ananassa HOM05D001826 ORTHO05D015538 3.2e-29 131.3 77 94.8
FvH4_1g27770 Fragaria vesca HOM05D009478 ORTHO05D010213 2.7e-28 128.3 72 98.6
FAN26G2595 Fragaria x ananassa HOM05D001826 ORTHO05D015538 2.3e-27 125.2 77 92.2
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 3.9e-27 124.4 72 97.2
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 3.9e-27 124.4 72 97.2
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 3.9e-27 124.4 72 97.2
FAN26G0127 Fragaria x ananassa HOM05D001826 ORTHO05D015538 2.5e-26 121.7 77 90.9
RcHm_v2.0_Chr1g0353741 Rosa chinensis HOM05D001826 ORTHO05D004184 3.3e-26 121.3 72 91.7
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.1e-24 116.3 72 91.7
FAN19G2020 Fragaria x ananassa HOM05D001826 ORTHO05D015538 1.4e-24 115.9 66 98.5
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 2.4e-24 115.2 72 87.5
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 2.4e-24 115.2 72 87.5
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 4.1e-24 114.4 72 84.7
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 4.1e-24 114.4 72 84.7
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 5.3e-24 114.0 72 83.3
Aa31LG5G380 Aethionema arabicum HOM05D001826 ORTHO05D004184 5.3e-24 114.0 72 83.3
Solyc01g094290.3 Solanum lycopersicum HOM05D001826 ORTHO05D004184 5.3e-24 114.0 72 84.7
Sopen01g038090 Solanum pennellii HOM05D001826 ORTHO05D004184 5.3e-24 114.0 72 84.7
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 5.3e-24 114.0 72 83.3
GSVIVG01026846001 Vitis vinifera HOM05D001826 ORTHO05D004184 5.3e-24 114.0 72 84.7
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 6.9e-24 113.6 72 81.9
HanXRQChr03g0093471 Helianthus annuus HOM05D001826 ORTHO05D004184 6.9e-24 113.6 72 81.9
Atru.chr5.450 Acer truncatum HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 84.7
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 84.7
AT1G01790 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
Carub.0001s0042 Capsella rubella HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
Carub.0006s3656 Capsella rubella HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
CARHR000530 Cardamine hirsuta HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
Dinv32449 Davidia involucrata HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 84.7
Lj9C580G11 Lonicera japonica HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
Peaxi162Scf00397g00111 Petunia axillaris HOM05D001826 ORTHO05D004184 9.1e-24 113.2 72 83.3
DCAR_008601 Daucus carota HOM05D001826 ORTHO05D004184 1.2e-23 112.8 72 84.7
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 1.2e-23 112.8 72 84.7
Sp1g00500 Schrenkiella parvula HOM05D001826 ORTHO05D004184 1.2e-23 112.8 72 83.3
AL6G52810 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 1.5e-23 112.5 72 81.9
A10p00260 Brassica napus HOM05D001826 ORTHO05D004184 1.5e-23 112.5 72 83.3
BraA10t42302Z Brassica rapa HOM05D001826 ORTHO05D004184 1.5e-23 112.5 72 83.3
Gohir.D08G151300 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.5e-23 112.5 72 83.3
Gorai.004G157200 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.5e-23 112.5 72 83.3
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 1.5e-23 112.5 72 81.9
Actinidia12714 Actinidia chinensis HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 81.9
AL1G10550 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 81.9
CANSAT56G1923 Cannabis sativa HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 83.3
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 81.9
CiPaw.01G057800 Carya illinoinensis HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 84.7
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 84.7
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 2.0e-23 112.1 72 80.6
C05p00270 Brassica napus HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 81.9
BolC5t28817H Brassica oleracea HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 81.9
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 80.6
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 83.3
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 83.3
Nn6g33530 Nelumbo nucifera HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 81.9
Oeu004525.1 Olea europaea HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 83.3
Psat4g153760 Pisum sativum HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 84.7
Potri.014G080800 Populus trichocarpa HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 81.9
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 84.7
TAR374G0002 Trochodendron aralioides HOM05D001826 ORTHO05D004184 2.6e-23 111.7 72 81.9
AT4G00630 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 3.4e-23 111.3 72 80.6
BcaB03g13615 Brassica carinata HOM05D001826 ORTHO05D004184 3.4e-23 111.3 72 81.9
DCAR_006915 Daucus carota HOM05D001826 ORTHO05D004184 3.4e-23 111.3 72 81.9
Thhalv10006607m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 3.4e-23 111.3 72 81.9
Manes.05G037400 Manihot esculenta HOM05D001826 ORTHO05D004184 3.4e-23 111.3 72 83.3
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 4.5e-23 110.9 72 83.3
Gohir.A08G130000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 4.5e-23 110.9 72 81.9
Sp1g00490 Schrenkiella parvula HOM05D001826 ORTHO05D004184 4.5e-23 110.9 72 79.2
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 4.5e-23 110.9 72 81.9
MSTRG.20812 Avicennia marina HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 81.9
COL.COLO4_12675 Corchorus olitorius HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 79.2
Gohir.A12G105000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 83.3
Gohir.D12G108900 Gossypium hirsutum HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 83.3
Gorai.008G118000 Gossypium raimondii HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 83.3
Lsat_1_v5_gn_7_5161 Lactuca sativa HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 80.6
PSO063G0747 Papaver somniferum HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 84.7
PSO782G0182 Papaver somniferum HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 84.7
Hund16940 Selenicereus undatus HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 77.8
THA.LOC104801451 Tarenaya hassleriana HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 80.6
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 5.9e-23 110.5 72 81.9
CSS0017008 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 7.7e-23 110.2 72 81.9
CSS0033058 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 7.7e-23 110.2 72 81.9
Glyma.03G014000 Glycine max HOM05D001826 ORTHO05D004184 7.7e-23 110.2 72 81.9
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 7.7e-23 110.2 72 80.6
HanXRQChr06g0169881 Helianthus annuus HOM05D001826 ORTHO05D004184 7.7e-23 110.2 72 79.2
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 7.7e-23 110.2 72 81.9
BcaB03g13616 Brassica carinata HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 80.6
A10p00230 Brassica napus HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 80.6
C05p00260 Brassica napus HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 80.6
C08p53870 Brassica napus HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 79.2
BolC5t28815H Brassica oleracea HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 80.6
BolC8t52901H Brassica oleracea HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 79.2
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 79.2
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 81.9
Oeu014675.3 Olea europaea HOM05D001826 ORTHO05D004184 1.0e-22 109.8 76 78.9
Potri.002G157200 Populus trichocarpa HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 80.6
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 1.0e-22 109.8 72 80.6
BraA09t42264Z Brassica rapa HOM05D001826 ORTHO05D004184 1.3e-22 109.4 72 79.2
Glyma.07G073700 Glycine max HOM05D001826 ORTHO05D004184 1.3e-22 109.4 72 80.6
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 1.3e-22 109.4 72 79.2
Lj3g0020333 Lotus japonicus HOM05D001826 ORTHO05D004184 1.3e-22 109.4 72 79.2
Sabra14G0058600 Salix brachista HOM05D001826 ORTHO05D004184 1.3e-22 109.4 72 80.6
VMungo0331G1572 Vigna mungo HOM05D001826 ORTHO05D004184 1.3e-22 109.4 72 81.9
Actinidia20930 Actinidia chinensis HOM05D001826 ORTHO05D004184 1.7e-22 109.0 72 79.2
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 1.7e-22 109.0 72 81.9
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 1.7e-22 109.0 72 80.6
Eucgr.E00180 Eucalyptus grandis HOM05D001826 ORTHO05D004184 1.7e-22 109.0 72 79.2
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 1.7e-22 109.0 72 79.2
Phvul.010G095600 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 1.7e-22 109.0 72 79.2
Ciclev10018563m.g Citrus clementina HOM05D001826 ORTHO05D004184 2.2e-22 108.6 72 77.8
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 2.2e-22 108.6 72 76.4
SalBow3G1103 Salvia bowleyana HOM05D001826 ORTHO05D004184 2.2e-22 108.6 72 79.2
EL10Ac1g00529 Beta vulgaris HOM05D001826 ORTHO05D004184 2.9e-22 108.2 72 77.8
Thhalv10006595m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 2.9e-22 108.2 72 79.2
Hma1.2p1_0001F.1_g001660 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 2.9e-22 108.2 72 79.2
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 2.9e-22 108.2 72 81.9
SalBow5G0163 Salvia bowleyana HOM05D001826 ORTHO05D004184 3.8e-22 107.8 72 76.4
SalBow5G2532 Salvia bowleyana HOM05D001826 ORTHO05D004184 3.8e-22 107.8 72 76.4
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 3.8e-22 107.8 72 80.6
SGA_v2.0_scaffold277G46674 Striga asiatica HOM05D001826 ORTHO05D004184 3.8e-22 107.8 72 77.8
arahy.Tifrunner.gnm1.ann1.8F4Z70 Arachis hypogaea HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 79.2
arahy.Tifrunner.gnm1.ann1.SLD8LW Arachis hypogaea HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 79.2
MSTRG.4866 Avicennia marina HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 79.2
Duzib133G0016 Durio zibethinus HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 80.6
Phvul.010G095800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 79.2
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 77.8
TWI23G0863 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 5.0e-22 107.5 72 77.8
CSS0031422 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 6.5e-22 107.1 72 79.2
DCAR_025143 Daucus carota HOM05D001826 ORTHO05D004184 6.5e-22 107.1 72 77.8
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 6.5e-22 107.1 72 75.0
DCAR_015945 Daucus carota HOM05D001826 ORTHO05D004184 1.1e-21 106.3 72 77.8
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 1.1e-21 106.3 72 79.2
Sabra02G0124800 Salix brachista HOM05D001826 ORTHO05D004184 1.1e-21 106.3 72 80.6
Sc18g0003430 Simmondsia chinensis HOM05D001826 ORTHO05D004184 1.1e-21 106.3 72 76.4
TWI59G0720 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 1.1e-21 106.3 72 76.4
TWI59G1454 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 1.1e-21 106.3 72 76.4
unitig_8.g3808 Utricularia gibba HOM05D001826 ORTHO05D004184 1.1e-21 106.3 72 76.4
CDE04G2063 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 1.4e-21 105.9 72 75.0
AUR62004319 Chenopodium quinoa HOM05D001826 ORTHO05D004184 1.4e-21 105.9 72 73.6
Ca_07891_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 1.4e-21 105.9 72 77.8
CDE06G1001 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 2.5e-21 105.1 72 75.0
Ah.05g176450 Amaranthus hybridus HOM05D001826 ORTHO05D004184 3.2e-21 104.8 70 75.7
Medtr7g076700 Medicago truncatula HOM05D001826 ORTHO05D004184 3.2e-21 104.8 72 76.4
CAN.G413.20 Capsicum annuum HOM05D001826 ORTHO05D015538 5.5e-21 104.0 72 79.2
AUR62033325 Chenopodium quinoa HOM05D001826 ORTHO05D004184 5.5e-21 104.0 72 73.6
AUR62033334 Chenopodium quinoa HOM05D001826 ORTHO05D004184 5.5e-21 104.0 72 73.6
CSS0018991 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 7.2e-21 103.6 72 77.8
CSS0022195 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 7.2e-21 103.6 72 77.8
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 7.2e-21 103.6 72 80.6
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 9.4e-21 103.2 72 76.4
Gorai.001G170200 Gossypium raimondii HOM05D001826 ORTHO05D004184 9.4e-21 103.2 72 77.8
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 9.4e-21 103.2 72 73.6
TPR.G37729 Trifolium pratense HOM05D001826 ORTHO05D004184 9.4e-21 103.2 72 75.0
Rhsim07G0018000 Rhododendron simsii HOM05D001826 ORTHO05D004184 1.6e-20 102.4 72 73.6
CSS0015913 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D015538 2.1e-20 102.1 70 78.6
arahy.Tifrunner.gnm1.ann1.253UZ6 Arachis hypogaea HOM05D001826 ORTHO05D004184 2.7e-20 101.7 72 75.0
arahy.Tifrunner.gnm1.ann1.42EX8Y Arachis hypogaea HOM05D001826 ORTHO05D004184 2.7e-20 101.7 72 75.0
ATR0680G345 Amborella trichopoda HOM05D001826 ORTHO05D004184 3.6e-20 101.3 72 75.0
Phvul.008G067800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 3.6e-20 101.3 72 75.0
VMungo1383G3314 Vigna mungo HOM05D001826 ORTHO05D004184 4.7e-20 100.9 72 73.6
Psat3g110880 Pisum sativum HOM05D001826 ORTHO05D004184 6.1e-20 100.5 72 73.6
vmacro13307 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 7.9e-20 100.1 72 72.2
Zm00001eb065780 Zea mays HOM05D001826 ORTHO05D004184 1.0e-19 99.8 72 72.2
HPP92_020862 Vanilla planifolia HOM05D001826 ORTHO05D004184 1.4e-19 99.4 72 73.6
CSS0043877 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D015538 3.0e-19 98.2 70 77.1
CSS0034842 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 3.9e-19 97.8 72 73.6
Zm00001eb433980 Zea mays HOM05D001826 ORTHO05D004184 6.7e-19 97.1 72 70.8
CSS0004828 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D015538 1.1e-18 96.3 70 74.3
Pp3c11_6640 Physcomitrium patens HOM05D001826 ORTHO05D004184 1.3e-17 92.8 72 65.3
Pp3c7_22160 Physcomitrium patens HOM05D001826 ORTHO05D004184 1.3e-17 92.8 72 65.3
vmacro13309 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 2.2e-17 92.0 72 68.1
FAN26G2676 Fragaria x ananassa HOM05D011458 ORTHO05D208218 1.8e-16 89.0 55 90.9
Mapoly0055s0072 Marchantia polymorpha HOM05D001826 ORTHO05D004184 2.4e-16 88.6 72 63.9
SMO331G0018 Selaginella moellendorffii HOM05D001826 ORTHO05D004184 5.3e-16 87.4 72 61.1
Pp3c11_22410 Physcomitrium patens HOM05D001826 ORTHO05D004184 2.0e-15 85.5 72 62.5
CBR_g18697 Chara braunii HOM05D001826 ORTHO05D004184 5.5e-13 77.4 70 55.7
CSS0021712 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.4e-11 72.8 53 73.6
CSS0048057 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 9.7e-10 66.6 54 68.5
Cre04.g220200 Chlamydomonas reinhardtii HOM05D001826 ORTHO05D004184 1.1e-08 63.2 70 50.0
CSS0042566 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 4.1e-08 61.2 39 79.5
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 7.0e-08 60.5 39 79.5
Nn1g01432 Nelumbo nucifera HOM05D001826 ORTHO05D004184 7.0e-08 60.5 42 73.8
MCO01G795 Micromonas commoda HOM05D001826 ORTHO05D004184 5.0e-06 54.3 89 37.1
SEGI_26337 Sequoiadendron giganteum HOM05D001826 ORTHO05D007448 6.5e-06 53.9 69 46.4


User provided reference genes

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