Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27780 Fragaria vesca HOM05D000314 ORTHO05D000189 4.3e-53 211.1 107 100.0
FvH4_7g05400 Fragaria vesca HOM05D000314 ORTHO05D000189 2.8e-52 208.4 106 99.1
FAN10G1075 Fragaria x ananassa HOM05D000314 ORTHO05D000189 2.8e-52 208.4 106 99.1
FAN06G2563 Fragaria x ananassa HOM05D000314 ORTHO05D000189 1.4e-51 206.1 106 98.1
FAN01G0019 Fragaria x ananassa HOM05D000314 ORTHO05D000189 1.8e-51 205.7 106 98.1
RcHm_v2.0_Chr1g0332071 Rosa chinensis HOM05D000314 ORTHO05D000189 1.6e-23 112.8 119 57.1
MD02G1258300 Malus domestica HOM05D000314 ORTHO05D000189 1.6e-15 86.3 110 47.3
MD07G1062500 Malus domestica HOM05D000314 ORTHO05D000189 1.8e-14 82.8 102 46.1
Prupe.2G073600 Prunus persica HOM05D000314 ORTHO05D000189 1.5e-13 79.7 120 44.2
Cfa010510 Carpinus fangiana HOM05D000314 ORTHO05D000189 9.6e-13 77.0 132 40.9
Potri.010G243700 Populus trichocarpa HOM05D000314 ORTHO05D000189 9.6e-13 77.0 140 38.6
Haze_03440 Corylus avellana HOM05D000314 ORTHO05D000189 2.1e-12 75.9 132 39.4
GSVIVG01034614001 Vitis vinifera HOM05D000314 ORTHO05D000189 2.1e-12 75.9 119 42.0
Hma1.2p1_0153F.1_g067810 Hydrangea macrophylla HOM05D000314 ORTHO05D000189 8.2e-12 73.9 130 42.3
Sabra10G0190500 Salix brachista HOM05D000314 ORTHO05D000189 1.1e-11 73.6 87 51.7
CsaV3_6G004420 Cucumis sativus L. HOM05D000314 ORTHO05D000189 1.8e-11 72.8 77 49.4
Gohir.D13G003100 Gossypium hirsutum HOM05D000314 ORTHO05D000189 2.4e-11 72.4 78 51.3
Eucgr.J00303 Eucalyptus grandis HOM05D000314 ORTHO05D000189 4.0e-11 71.6 131 38.9
arahy.Tifrunner.gnm1.ann1.4N5B4T Arachis hypogaea HOM05D000314 ORTHO05D000189 9.0e-11 70.5 90 44.4
PGR044G1159 Punica granatum HOM05D000314 ORTHO05D000189 9.0e-11 70.5 136 38.2
Ciclev10017624m.g Citrus clementina HOM05D000314 ORTHO05D000189 1.5e-10 69.7 75 53.3
Cpa.g.sc33.131 Carica papaya HOM05D000314 ORTHO05D000189 2.0e-10 69.3 77 51.9
TWI38G1164 Tripterygium wilfordii HOM05D000314 ORTHO05D000189 2.0e-10 69.3 63 60.3
Manes.10G064400 Manihot esculenta HOM05D000314 ORTHO05D000189 3.4e-10 68.6 73 53.4
Thecc.10G118800 Theobroma cacao HOM05D000314 ORTHO05D000189 3.4e-10 68.6 134 35.1
arahy.Tifrunner.gnm1.ann1.4TYP4V Arachis hypogaea HOM05D000314 ORTHO05D000189 4.5e-10 68.2 61 55.7
CANSAT56G0913 Cannabis sativa HOM05D000314 ORTHO05D000189 4.5e-10 68.2 64 57.8
CiPaw.13G044900 Carya illinoinensis HOM05D000314 ORTHO05D000189 4.5e-10 68.2 94 42.6
QL04p048596 Quercus lobata HOM05D000314 ORTHO05D000189 4.5e-10 68.2 84 50.0
MELO3C019913.2 Cucumis melo HOM05D000314 ORTHO05D000189 5.8e-10 67.8 94 48.9
Oeu040011.1 Olea europaea HOM05D000314 ORTHO05D000189 5.8e-10 67.8 134 36.6
Duzib106G1525 Durio zibethinus HOM05D000314 ORTHO05D000189 7.6e-10 67.4 42 73.8
Gohir.A13G003200 Gossypium hirsutum HOM05D000314 ORTHO05D000189 7.6e-10 67.4 85 45.9
Gorai.013G003000 Gossypium raimondii HOM05D000314 ORTHO05D000189 7.6e-10 67.4 83 50.6
Lsat_1_v5_gn_2_106200 Lactuca sativa HOM05D000314 ORTHO05D000189 7.6e-10 67.4 68 58.8
TWI15G1032 Tripterygium wilfordii HOM05D000314 ORTHO05D000189 7.6e-10 67.4 41 75.6
VMungo0720G1777 Vigna mungo HOM05D000314 ORTHO05D000189 7.6e-10 67.4 95 42.1
Lj2C36T8 Lonicera japonica HOM05D000314 ORTHO05D000189 1.0e-09 67.0 94 45.7
Cc02_g09300 Coffea canephora HOM05D000314 ORTHO05D000189 1.3e-09 66.6 133 38.3
Duzib128G0192 Durio zibethinus HOM05D000314 ORTHO05D000189 1.7e-09 66.2 79 46.8
Ca_10427_v3 Cicer arietinum L. HOM05D000314 ORTHO05D000189 4.9e-09 64.7 110 40.0
ClCG08G008430 Citrullus lanatus HOM05D000314 ORTHO05D000189 1.1e-08 63.5 76 50.0
Lalb_Chr02g0150901 Lupinus albus HOM05D000314 ORTHO05D000189 1.1e-08 63.5 101 42.6
Nitab4.5_0003986g0010 Nicotiana tabacum HOM05D000314 ORTHO05D000189 1.1e-08 63.5 133 37.6
Atru.chr12.1086 Acer truncatum HOM05D000314 ORTHO05D000189 1.4e-08 63.2 76 48.7
Oeu033269.1 Olea europaea HOM05D000314 ORTHO05D000189 1.4e-08 63.2 64 54.7
Peaxi162Scf00120g01319 Petunia axillaris HOM05D000314 ORTHO05D000189 1.4e-08 63.2 65 49.2
Solyc11g006430.1 Solanum lycopersicum HOM05D000314 ORTHO05D000189 1.4e-08 63.2 103 35.9
Dinv01279 Davidia involucrata HOM05D000314 ORTHO05D000189 1.9e-08 62.8 121 38.0
MBI11_g18532_MAGBIO Magnolia biondii HOM05D000314 ORTHO05D000189 1.9e-08 62.8 108 39.8
PSO339G5838 Papaver somniferum HOM05D000314 ORTHO05D000189 1.9e-08 62.8 123 36.6
Sopen11g002330 Solanum pennellii HOM05D000314 ORTHO05D000189 1.9e-08 62.8 103 35.9
Lj5g0006764 Lotus japonicus HOM05D000314 ORTHO05D000189 2.5e-08 62.4 42 66.7
Manes.07G084800 Manihot esculenta HOM05D000314 ORTHO05D000189 2.5e-08 62.4 137 38.0
Dinv03814 Davidia involucrata HOM05D000314 ORTHO05D000189 3.2e-08 62.0 123 42.3
MSTRG.27549 Avicennia marina HOM05D000314 ORTHO05D000189 4.2e-08 61.6 85 42.4
Glyma.10G195200 Glycine max HOM05D000314 ORTHO05D000189 4.2e-08 61.6 43 62.8
ECA238G2867 Erigeron canadensis HOM05D000314 ORTHO05D000189 5.5e-08 61.2 57 59.6
Actinidia34064 Actinidia chinensis HOM05D000314 ORTHO05D000189 7.1e-08 60.8 70 52.9
Aqoxy1G00619 Aquilegia oxysepala HOM05D000314 ORTHO05D000189 7.1e-08 60.8 124 34.7
Nitab4.5_0001781g0160 Nicotiana tabacum HOM05D000314 ORTHO05D000189 7.1e-08 60.8 135 37.0
Psat6g171640 Pisum sativum HOM05D000314 ORTHO05D000189 7.1e-08 60.8 77 46.8
Sed0027605 Sechium edule HOM05D000314 ORTHO05D000189 7.1e-08 60.8 101 38.6
Phvul.007G137300 Phaseolus vulgaris HOM05D000314 ORTHO05D000189 9.3e-08 60.5 95 37.9
PGSC0003DMG400001987 Solanum tuberosum HOM05D000314 ORTHO05D000189 9.3e-08 60.5 71 45.1
TPR.G10269 Trifolium pratense HOM05D000314 ORTHO05D000189 9.3e-08 60.5 81 44.4
CSS0048558 Camellia sinensis var. sinensis HOM05D000314 ORTHO05D000189 2.7e-07 58.9 81 46.9
CAN.G143.51 Capsicum annuum HOM05D000314 ORTHO05D000189 2.7e-07 58.9 100 36.0
HanXRQChr14g0455541 Helianthus annuus HOM05D000314 ORTHO05D000189 2.7e-07 58.9 35 77.1
Oeu025603.2 Olea europaea HOM05D000314 ORTHO05D000189 4.6e-07 58.2 116 35.3
Sabra08G0009800 Salix brachista HOM05D000314 ORTHO05D000189 4.6e-07 58.2 73 46.6
COL.COLO4_26792 Corchorus olitorius HOM05D000031 ORTHO05D000030 6.0e-07 57.8 43 65.1
EL10Ac4g08733 Beta vulgaris HOM05D000314 ORTHO05D000189 1.0e-06 57.0 71 49.3
Medtr1g090400 Medicago truncatula HOM05D000314 ORTHO05D000189 1.3e-06 56.6 73 49.3
vmacro07274 Vaccinium macrocarpon HOM05D000314 ORTHO05D000189 1.3e-06 56.6 35 74.3
PSO384G5032 Papaver somniferum HOM05D000314 ORTHO05D000189 1.8e-06 56.2 100 39.0
RhsimUnG0029400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.8e-06 56.2 52 51.9
ATR0697G057 Amborella trichopoda HOM05D000314 ORTHO05D000189 3.9e-06 55.1 108 37.0
Nn2g14366 Nelumbo nucifera HOM05D000314 ORTHO05D000189 3.9e-06 55.1 159 32.1
Lalb_Chr21g0312771 Lupinus albus HOM05D000314 ORTHO05D000189 5.1e-06 54.7 80 40.0
AUR62014276 Chenopodium quinoa HOM05D000314 ORTHO05D000189 6.7e-06 54.3 39 64.1
TAR633G1197 Trochodendron aralioides HOM05D000314 ORTHO05D000189 6.7e-06 54.3 33 72.7
Potri.008G016100 Populus trichocarpa HOM05D000314 ORTHO05D000189 8.7e-06 53.9 73 46.6
Rhsim03G0094300 Rhododendron simsii HOM05D000314 ORTHO05D000189 8.7e-06 53.9 86 44.2
HPP92_015643 Vanilla planifolia HOM05D000314 ORTHO05D000189 8.7e-06 53.9 63 49.2


User provided reference genes

Program Settings