Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.2e-131 472.2 226 100.0
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-106 387.9 307 68.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.0e-77 292.0 134 97.8
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.5e-76 290.0 134 97.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.4e-75 284.3 134 96.3
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-74 281.6 134 94.8
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 9.3e-74 280.8 134 91.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.7e-73 279.3 134 91.8
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 3.3e-71 272.3 134 91.0
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 5.3e-69 265.0 134 88.1
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.2e-66 255.8 134 83.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 3.0e-64 249.2 134 79.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.4e-63 244.6 134 76.1
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 9.6e-63 244.2 133 76.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.8e-62 242.7 134 74.6
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.7e-62 242.3 134 75.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.2e-62 241.5 133 75.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.4e-61 240.4 136 73.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 4.0e-61 238.8 135 73.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 9.0e-61 237.7 134 72.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 9.0e-61 237.7 134 74.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.2e-60 237.3 135 74.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.0e-60 236.5 134 74.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.0e-60 236.5 134 73.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.6e-60 236.1 134 73.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.6e-60 236.1 133 74.4
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 3.4e-60 235.7 134 71.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 3.4e-60 235.7 134 75.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.4e-60 235.7 135 73.3
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 4.5e-60 235.3 134 72.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 4.5e-60 235.3 134 76.1
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 5.8e-60 235.0 134 70.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 7.6e-60 234.6 130 76.2
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 7.6e-60 234.6 133 72.2
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 7.6e-60 234.6 134 73.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.3e-59 233.8 134 73.1
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.3e-59 233.8 134 74.6
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.3e-59 233.8 134 73.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.2e-59 233.0 134 73.1
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.2e-59 233.0 134 70.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.2e-59 233.0 134 72.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.9e-59 232.6 134 75.4
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 2.9e-59 232.6 134 71.6
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.9e-59 232.6 127 76.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.9e-59 232.6 134 72.4
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 3.8e-59 232.3 137 70.8
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.9e-59 231.9 134 73.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 6.5e-59 231.5 135 71.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 6.5e-59 231.5 139 69.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 6.5e-59 231.5 134 69.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.5e-59 231.5 134 73.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 8.4e-59 231.1 135 73.3
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.4e-58 230.3 121 80.2
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.4e-58 230.3 134 73.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.9e-58 229.9 134 69.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.9e-58 229.9 133 71.4
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.9e-58 229.9 134 69.4
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.9e-58 229.9 138 70.3
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 3.2e-58 229.2 134 70.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 4.2e-58 228.8 138 66.7
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 5.5e-58 228.4 134 70.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.1e-58 228.0 134 69.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 7.1e-58 228.0 134 67.9
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 9.3e-58 227.6 134 68.7
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.2e-57 227.3 134 73.1
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.2e-57 227.3 134 73.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.6e-57 226.9 134 70.9
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.6e-57 226.9 134 70.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.5e-57 225.7 134 68.7
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-57 225.3 134 69.4
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 6.0e-57 224.9 123 75.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.0e-56 224.2 127 73.2
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.0e-56 224.2 132 69.7
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.3e-56 223.8 137 68.6
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.3e-56 223.8 134 67.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.3e-56 223.0 134 70.1
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.1e-55 220.7 126 72.2
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.5e-55 220.3 134 67.2
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.9e-55 219.9 135 67.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.9e-55 219.9 128 70.3
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.9e-55 219.9 131 71.0
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 2.5e-55 219.5 134 67.2
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.3e-55 219.2 134 66.4
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 4.3e-55 218.8 134 69.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 5.7e-55 218.4 132 68.9
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 5.7e-55 218.4 136 69.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.4e-55 218.0 127 69.3
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.4e-55 218.0 136 70.6
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-54 217.2 121 76.0
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.3e-54 217.2 137 67.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-54 216.9 121 72.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.7e-54 215.7 134 67.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 4.8e-54 215.3 134 66.4
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 6.3e-54 214.9 134 67.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.4e-53 213.8 134 68.7
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.4e-53 213.8 134 66.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.4e-53 213.8 134 66.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 3.1e-53 212.6 134 68.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 4.1e-53 212.2 134 67.2
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.5e-52 210.3 133 66.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.5e-52 208.8 134 66.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.8e-52 208.4 133 65.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 5.8e-52 208.4 133 65.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.8e-52 208.4 121 71.1
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 7.6e-52 208.0 136 63.2
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.3e-51 207.2 134 64.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.3e-51 207.2 122 72.1
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.2e-51 206.5 133 66.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 2.2e-51 206.5 125 70.4
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 3.8e-51 205.7 131 64.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.5e-50 203.0 134 62.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.2e-50 202.6 133 63.2
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 3.2e-50 202.6 125 68.0
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 3.2e-50 202.6 173 54.9
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.2e-49 200.7 127 60.6
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.1e-49 199.9 133 61.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.1e-49 198.4 133 60.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.1e-49 198.4 129 61.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 7.9e-49 198.0 128 64.1
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.5e-47 193.7 128 61.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.9e-47 193.4 126 62.7
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.9e-47 193.4 134 63.4
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 7.4e-47 191.4 131 61.8
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.7e-47 191.0 134 59.7
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.3e-46 190.7 118 62.7
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.2e-46 189.9 132 59.8
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.7e-46 189.1 130 63.1
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-44 184.1 134 61.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.0e-44 183.3 128 60.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 5.0e-43 178.7 130 59.2
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.4e-42 177.2 130 60.8
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.5e-42 176.4 112 66.1
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 9.4e-42 174.5 106 66.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.8e-40 170.2 130 58.5
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.0e-40 169.5 135 57.8
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.0e-39 166.8 96 71.9
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.1e-37 161.0 125 55.2
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.4e-37 159.8 118 57.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-36 156.4 97 72.2
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 3.4e-36 156.0 97 70.1
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.7e-35 153.7 126 51.6
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.5e-34 148.7 69 95.7
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.4e-34 147.9 86 73.3
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 6.3e-30 135.2 75 76.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.8e-29 133.7 142 40.1
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 2.5e-26 123.2 74 73.0
FvH4_7g05250 Fragaria vesca HOM05D000098 ORTHO05D000546 1.2e-25 120.9 154 51.3
FAN03G3490 Fragaria x ananassa HOM05D000098 ORTHO05D000546 4.7e-25 119.0 154 50.6
FAN01G1078 Fragaria x ananassa HOM05D000098 ORTHO05D000546 4.0e-24 115.9 150 50.0
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.8e-24 114.8 112 47.3
FAN10G3458 Fragaria x ananassa HOM05D000098 ORTHO05D000546 3.1e-21 106.3 130 52.3
FAN06G3661 Fragaria x ananassa HOM05D000098 ORTHO05D000546 9.1e-21 104.8 130 52.3
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-20 104.4 63 69.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.5e-20 102.4 78 55.1
RcHm_v2.0_Chr1g0332061 Rosa chinensis HOM05D000098 ORTHO05D000546 6.5e-19 98.6 155 43.9
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.6e-17 94.0 80 50.0
FAN09G3503 Fragaria x ananassa HOM05D000098 ORTHO05D000546 1.7e-11 73.9 41 90.2
Prupe.2G073300 Prunus persica HOM05D000098 ORTHO05D000546 3.0e-08 63.2 58 44.8
MD07G1062400 Malus domestica HOM05D000098 ORTHO05D000546 4.4e-07 59.3 61 42.6
FAN26G2730 Fragaria x ananassa HOM05D047727 ORTHO05D207773 5.7e-07 58.9 103 40.8
QL04p048570 Quercus lobata HOM05D000098 ORTHO05D000546 1.3e-06 57.8 54 40.7
FAN19G2898 Fragaria x ananassa HOM05D047727 ORTHO05D205236 2.8e-06 56.6 42 66.7
COL.COLO4_35093 Corchorus olitorius HOM05D000098 ORTHO05D000546 4.9e-06 55.8 81 35.8
Haze_03442 Corylus avellana HOM05D000098 ORTHO05D000546 4.9e-06 55.8 42 57.1
CiPaw.13G044700 Carya illinoinensis HOM05D000098 ORTHO05D000546 6.3e-06 55.5 47 48.9


User provided reference genes

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