Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 9.6e-59 229.9 116 100.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.7e-48 193.7 101 94.1
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 5.1e-36 154.5 85 90.6
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-35 153.3 82 95.1
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-35 152.9 95 84.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-35 152.9 82 93.9
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.4e-35 151.4 82 93.9
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.7e-35 151.0 81 96.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 7.4e-35 150.6 82 92.7
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.2e-34 147.1 82 90.2
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.1e-33 145.2 82 91.5
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-32 143.3 80 91.2
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.9e-32 141.0 82 87.8
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-31 139.0 81 91.4
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.7e-29 131.3 78 83.3
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-27 126.7 72 90.3
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.4e-27 124.0 67 95.5
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.2e-26 122.5 80 75.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 4.8e-26 121.3 80 77.5
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.1e-25 118.2 80 73.8
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.5e-24 115.2 80 75.0
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.5e-24 115.2 78 76.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.5e-24 115.2 80 72.5
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.2e-23 112.5 78 73.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.9e-23 112.1 80 71.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 3.8e-23 111.7 78 74.4
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 3.8e-23 111.7 78 71.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 5.0e-23 111.3 78 74.4
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 8.5e-23 110.5 78 70.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 8.5e-23 110.5 78 70.5
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.1e-22 110.2 116 56.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.1e-22 110.2 78 71.8
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.1e-22 110.2 80 72.5
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.1e-22 110.2 80 72.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-22 109.8 78 70.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-22 109.4 77 74.0
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.5e-22 109.0 78 71.8
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 3.2e-22 108.6 78 71.8
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 4.2e-22 108.2 80 65.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.2e-22 108.2 80 67.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 7.2e-22 107.5 80 67.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 9.4e-22 107.1 78 71.8
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.1e-21 105.9 80 67.5
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 3.6e-21 105.1 80 62.5
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 3.6e-21 105.1 80 62.5
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 3.6e-21 105.1 74 68.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.7e-21 104.8 78 69.2
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 6.1e-21 104.4 80 68.8
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 8.0e-21 104.0 78 66.7
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 8.0e-21 104.0 78 71.8
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.8e-20 102.8 80 68.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.8e-20 102.8 78 65.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.8e-20 102.8 78 66.7
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.8e-20 102.8 78 66.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.8e-20 102.8 78 69.2
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.3e-20 102.4 78 67.9
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 2.3e-20 102.4 77 67.5
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.3e-20 102.4 78 66.7
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.0e-20 101.7 77 67.5
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.0e-20 101.7 77 67.5
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 8.8e-20 100.5 77 66.2
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 8.8e-20 100.5 77 66.2
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 8.8e-20 100.5 77 67.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-19 99.8 78 65.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.5e-19 99.8 80 61.2
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.5e-19 99.8 80 66.2
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-19 99.0 80 63.8
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.4e-19 98.6 78 62.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 3.4e-19 98.6 68 73.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 7.5e-19 97.4 80 63.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 9.7e-19 97.1 82 65.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.7e-18 96.3 78 65.4
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.7e-18 96.3 78 61.5
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.2e-18 95.9 75 65.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 4.8e-18 94.7 78 59.0
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.1e-17 93.6 79 63.3
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.4e-17 93.2 110 50.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 3.1e-17 92.0 80 57.5
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 5.3e-17 91.3 80 58.8
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.3e-17 91.3 80 57.5
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 5.3e-17 91.3 80 56.2
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 9.1e-17 90.5 80 57.5
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 9.1e-17 90.5 78 52.6
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.0e-16 89.4 80 56.2
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.0e-16 89.4 73 60.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 2.0e-16 89.4 78 55.1
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.7e-16 89.0 80 60.0
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.5e-16 88.6 80 56.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 3.5e-16 88.6 80 56.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.5e-16 88.2 77 57.1
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.9e-16 87.8 80 55.0
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.9e-16 87.8 80 55.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.9e-16 87.8 80 55.0
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 5.9e-16 87.8 80 55.0
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 5.9e-16 87.8 80 56.2
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 5.9e-16 87.8 68 61.8
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 7.7e-16 87.4 78 61.5
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 7.7e-16 87.4 78 56.4
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 7.7e-16 87.4 78 56.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 7.7e-16 87.4 78 57.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.0e-15 87.0 78 57.7
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.3e-15 86.7 80 53.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.3e-15 86.7 80 53.8
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.7e-15 86.3 76 52.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 2.2e-15 85.9 78 53.8
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.2e-15 85.9 77 59.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.9e-15 85.5 73 60.3
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 5.0e-15 84.7 73 60.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 6.5e-15 84.3 80 55.0
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 8.5e-15 84.0 80 55.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.5e-14 83.2 78 50.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.9e-14 82.8 78 51.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.5e-14 82.4 80 52.5
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.5e-14 82.4 78 53.8
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 9.4e-14 80.5 77 51.9
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.6e-13 78.6 78 52.6
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.6e-13 78.6 80 55.0
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.4e-12 76.6 78 51.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 5.2e-12 74.7 80 52.5
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.8e-12 74.3 68 52.9
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 8.8e-12 73.9 58 58.6
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 8.8e-12 73.9 72 54.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.0e-11 72.8 55 61.8
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 2.0e-11 72.8 55 61.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.6e-11 72.4 80 51.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.4e-11 72.0 72 52.8
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.7e-10 69.7 80 47.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 4.8e-10 68.2 66 54.5
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.1e-09 65.5 50 62.0
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 7.0e-09 64.3 82 43.9
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-08 63.2 57 49.1
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-08 63.2 64 50.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.0e-08 62.8 80 43.8
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.9e-08 61.2 80 45.0
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.7e-07 59.7 80 43.8
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 8.6e-07 57.4 53 58.5


User provided reference genes

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