Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 8.9e-58 226.9 126 100.0
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-57 224.9 126 99.2
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-56 221.9 126 97.6
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-56 221.9 126 97.6
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.4e-55 217.6 126 96.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.0e-55 217.2 126 96.0
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 7.8e-54 213.8 126 93.7
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.9e-50 200.3 126 87.3
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-49 198.4 126 86.5
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 4.4e-49 198.0 126 85.7
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-49 198.0 126 85.7
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 5.8e-49 197.6 126 86.5
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-49 197.6 126 86.5
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.5e-49 197.2 126 85.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-48 196.1 126 85.7
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.9e-48 194.5 126 84.1
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 8.6e-45 183.7 126 86.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 9.2e-39 163.7 127 75.6
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.1e-38 162.5 118 73.7
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 6.0e-38 161.0 119 75.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 7.8e-38 160.6 119 75.6
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 3.9e-37 158.3 124 73.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.1e-36 156.8 124 71.8
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.9e-36 156.0 123 72.4
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-36 155.6 126 70.6
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 7.3e-36 154.1 124 71.0
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.7e-35 151.4 125 70.4
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.7e-35 151.4 127 69.3
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 8.1e-35 150.6 123 68.3
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 8.1e-35 150.6 123 70.7
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.1e-34 150.2 121 69.4
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.4e-34 149.8 121 71.9
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.8e-34 149.4 121 69.4
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.1e-34 148.7 121 69.4
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 5.2e-34 147.9 124 68.5
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.8e-34 147.5 103 79.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.8e-34 147.5 124 67.7
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 6.8e-34 147.5 113 74.3
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 8.9e-34 147.1 124 66.1
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-33 146.7 125 69.6
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.5e-33 146.4 125 68.8
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.6e-33 145.6 121 68.6
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.4e-33 144.8 125 68.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.6e-33 144.1 128 68.8
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 9.9e-33 143.7 119 67.2
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 9.9e-33 143.7 125 69.6
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.7e-32 142.9 125 69.6
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.2e-32 142.5 123 65.9
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.9e-32 142.1 128 68.8
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.7e-32 141.7 124 66.1
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.9e-32 141.4 103 71.8
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.9e-32 141.4 127 66.9
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.9e-32 141.4 122 67.2
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 6.4e-32 141.0 123 64.2
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 8.4e-32 140.6 125 68.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.1e-31 140.2 125 68.8
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.1e-31 140.2 127 69.3
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.4e-31 139.8 124 67.7
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.4e-31 139.0 123 63.4
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.4e-31 139.0 105 71.4
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.1e-31 138.3 123 65.9
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.2e-30 136.7 123 65.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.2e-30 136.7 123 64.2
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.6e-30 136.3 129 64.3
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.5e-30 135.2 123 65.9
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 3.5e-30 135.2 120 65.0
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.6e-30 134.8 125 69.6
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 66.9
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.3e-29 133.3 94 81.9
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.3e-29 133.3 118 68.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.7e-29 132.9 123 64.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.3e-29 132.5 127 65.4
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 3.0e-29 132.1 123 61.8
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 63.2
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.9e-29 131.7 126 64.3
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 5.1e-29 131.3 125 65.6
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 6.6e-29 131.0 123 61.8
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 8.6e-29 130.6 120 65.8
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-28 129.8 120 61.7
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-28 129.8 123 63.4
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.5e-28 129.8 123 64.2
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 124 62.9
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 4.3e-28 128.3 123 63.4
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.3e-28 128.3 124 58.9
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.3e-28 128.3 120 64.2
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 5.6e-28 127.9 125 61.6
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 5.6e-28 127.9 125 61.6
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 7.3e-28 127.5 127 66.1
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-27 126.7 127 64.6
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.2e-27 126.7 120 62.5
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.6e-27 126.3 129 61.2
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.6e-27 126.3 129 64.3
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.1e-27 125.9 122 62.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.7e-27 124.8 126 60.3
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.2e-27 124.4 123 60.2
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.1e-26 123.6 126 57.1
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.8e-26 122.9 122 58.2
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.8e-26 122.9 122 58.2
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.8e-26 122.9 123 59.3
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.4e-26 122.5 129 64.3
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.4e-26 122.5 129 64.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 3.1e-26 122.1 129 64.3
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 3.1e-26 122.1 129 64.3
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 3.1e-26 122.1 129 64.3
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 3.1e-26 122.1 120 64.2
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 4.0e-26 121.7 129 62.8
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 4.0e-26 121.7 123 61.0
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 120 62.5
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 60.0
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 123 58.5
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 6.8e-26 120.9 124 55.6
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.8e-26 120.9 125 59.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 8.9e-26 120.6 124 61.3
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 8.9e-26 120.6 123 60.2
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 8.9e-26 120.6 120 63.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.2e-25 120.2 131 61.1
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.5e-25 119.8 131 62.6
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.5e-25 119.8 113 62.8
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.0e-25 119.4 128 60.2
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.6e-25 119.0 123 56.9
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 3.4e-25 118.6 131 61.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 4.4e-25 118.2 131 61.8
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 5.8e-25 117.9 109 63.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 5.8e-25 117.9 126 58.7
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 5.8e-25 117.9 123 59.3
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 7.6e-25 117.5 126 57.1
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 9.9e-25 117.1 123 57.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 9.9e-25 117.1 119 61.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 9.9e-25 117.1 124 58.1
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 127 58.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 2.2e-24 115.9 125 56.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.9e-24 115.5 129 57.4
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 3.8e-24 115.2 124 58.9
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.4e-23 113.2 131 55.7
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.9e-23 112.8 130 56.2
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.4e-23 112.5 123 58.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.2e-23 111.7 130 53.1
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 7.1e-23 110.9 124 54.8
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.0e-22 107.8 128 53.9
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 6.0e-22 107.8 122 53.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.7e-21 106.3 128 53.9
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.1e-21 104.8 122 57.4
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.1e-20 103.6 127 52.8
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.5e-20 102.4 126 50.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 4.8e-19 98.2 127 56.7
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.4e-18 95.9 118 50.0
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.4e-18 95.9 124 50.0
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 3.4e-17 92.0 113 50.4
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.3e-16 90.1 123 48.0
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.9e-16 88.2 105 51.4
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 2.4e-15 85.9 73 67.1
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.7e-14 82.4 79 63.3
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.5e-14 82.0 51 90.2
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.3e-13 80.1 122 41.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 5.1e-13 78.2 71 60.6
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 6.6e-13 77.8 88 50.0
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.5e-12 76.6 122 38.5
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 4.3e-12 75.1 125 42.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 5.6e-12 74.7 58 70.7
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 2.1e-11 72.8 109 47.7
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 2.2e-08 62.8 124 37.1
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 1.1e-07 60.5 79 46.8
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 3.2e-07 58.9 124 35.5
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 7.1e-07 57.8 114 43.9


User provided reference genes

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