Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.6e-97 358.2 178 100.0
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.8e-96 354.0 178 97.8
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.7e-94 348.2 178 96.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-93 346.3 180 96.7
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.2e-93 345.1 178 97.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.0e-92 342.4 178 96.1
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 7.8e-76 287.3 172 84.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 4.3e-74 281.6 180 78.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 5.6e-74 281.2 159 83.6
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 6.2e-73 277.7 161 81.4
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 8.9e-72 273.9 159 83.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.0e-71 272.7 170 81.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.6e-71 272.3 164 82.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.1e-69 266.9 164 79.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.4e-69 266.5 159 80.5
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 2.4e-69 265.8 166 78.9
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.4e-69 265.8 162 79.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.1e-69 265.0 162 80.9
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.4e-69 264.6 169 77.5
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 7.1e-69 264.2 159 81.8
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.2e-68 263.5 166 77.1
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.2e-68 263.5 163 79.1
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.6e-68 263.1 159 78.6
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.7e-68 262.3 168 75.6
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.7e-68 262.3 159 78.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 3.5e-68 261.9 166 75.9
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 6.0e-68 261.2 168 75.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 7.8e-68 260.8 165 76.4
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 7.8e-68 260.8 166 76.5
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.0e-67 260.4 162 77.8
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.0e-67 260.4 160 78.8
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.7e-67 259.6 165 77.6
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.3e-67 259.2 163 76.1
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 79.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 76.7
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 76.7
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 76.7
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.3e-67 259.2 159 79.9
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.0e-67 258.8 160 77.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.0e-67 258.8 164 77.4
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.9e-67 258.5 159 78.6
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 3.9e-67 258.5 159 78.6
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.9e-67 258.5 160 78.8
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.1e-67 258.1 159 76.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 6.6e-67 257.7 160 78.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.9e-66 256.1 159 78.0
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 4.3e-66 255.0 162 76.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 5.6e-66 254.6 165 73.3
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.6e-66 254.6 160 76.2
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 9.6e-66 253.8 178 73.6
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.6e-66 253.8 165 75.8
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 9.6e-66 253.8 160 76.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 9.6e-66 253.8 162 76.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.2e-65 253.4 164 77.4
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.6e-65 253.1 164 75.6
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.8e-65 252.3 163 75.5
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 3.6e-65 251.9 159 76.1
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 4.7e-65 251.5 159 74.2
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.7e-65 251.5 189 69.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 6.2e-65 251.1 159 74.2
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.2e-65 251.1 188 68.6
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.2e-65 251.1 188 68.6
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.2e-65 251.1 188 68.6
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 6.2e-65 251.1 163 74.8
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.4e-64 250.0 159 73.0
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.4e-64 250.0 172 70.3
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.8e-64 249.6 162 74.1
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.8e-64 249.6 165 70.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.8e-64 249.6 164 72.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.1e-64 248.8 162 76.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 4.0e-64 248.4 164 76.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 4.0e-64 248.4 167 73.1
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 5.2e-64 248.1 159 73.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 9.0e-64 247.3 159 73.0
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.5e-63 246.5 166 74.7
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 4.4e-63 245.0 159 74.8
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 4.4e-63 245.0 159 74.8
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 4.4e-63 245.0 159 74.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 9.9e-63 243.8 159 74.8
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 9.9e-63 243.8 159 74.2
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.3e-62 243.4 159 76.1
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.7e-62 243.0 159 75.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.2e-62 242.7 159 74.8
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.9e-62 242.3 159 75.5
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.9e-62 241.5 159 74.2
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 6.4e-62 241.1 159 74.2
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 6.4e-62 241.1 159 74.2
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 6.4e-62 241.1 159 73.6
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 8.4e-62 240.7 159 74.2
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.1e-61 240.4 152 77.6
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.4e-61 240.0 159 74.8
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.9e-61 239.6 159 73.6
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.9e-61 239.6 159 74.2
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.9e-61 239.6 161 73.3
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 3.2e-61 238.8 170 71.2
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 5.4e-61 238.0 159 73.6
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 5.4e-61 238.0 159 73.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 5.4e-61 238.0 159 73.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 7.1e-61 237.7 179 65.4
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.6e-60 236.5 161 68.3
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 2.7e-60 235.7 159 72.3
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.0e-59 233.8 205 60.5
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 5.1e-59 231.5 160 70.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-58 230.3 166 70.5
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.3e-58 228.4 167 65.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-57 226.1 135 79.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.1e-57 226.1 207 58.9
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 3.6e-57 225.3 218 56.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.1e-56 223.8 174 63.8
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 3.1e-56 222.2 257 49.4
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.3e-56 221.5 197 60.9
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 9.0e-56 220.7 184 64.1
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 9.3e-53 210.7 183 62.8
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 6.0e-52 208.0 145 70.3
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.9e-51 205.3 164 63.4
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.6e-49 199.9 116 79.3
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.9e-45 186.4 109 76.1
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 3.3e-42 175.6 159 61.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 7.4e-42 174.5 135 62.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.3e-41 173.7 167 53.9
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 6.5e-38 161.4 112 67.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.1e-36 156.4 102 72.5
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 3.5e-36 155.6 139 51.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.0e-35 152.5 103 72.8
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 6.7e-35 151.4 135 50.4
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 6.7e-35 151.4 112 65.2
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.6e-33 146.7 100 74.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.8e-32 143.3 95 74.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.4e-32 142.9 88 77.3
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.0e-30 135.2 113 59.3
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.2e-28 130.6 94 66.0
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.1e-28 129.8 108 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 4.8e-25 118.6 112 44.6
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.8e-24 116.7 70 80.0
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.8e-24 116.7 70 80.0
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 7.7e-23 111.3 64 82.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-22 110.5 98 59.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 8.5e-22 107.8 79 69.6
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.1e-21 107.5 110 41.8
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 7.2e-21 104.8 66 78.8
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.4e-21 104.4 93 57.0
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 4.7e-20 102.1 104 44.2
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 4.7e-20 102.1 90 52.2
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.9e-20 101.3 110 55.5
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.4e-19 100.5 81 65.4
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 3.9e-19 99.0 61 78.7
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.0e-18 96.7 60 71.7
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.1e-16 90.9 106 40.6
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 6.9e-16 88.2 140 37.1
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 6.5e-14 81.6 66 62.1
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.9e-06 56.2 32 84.4


User provided reference genes

Program Settings