Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 2792.7 1376 100.0
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 2773.0 1376 99.3
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 2676.0 1379 96.4
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 2649.8 1379 95.6
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 2461.0 1454 86.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 2397.9 1381 87.3
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 2013.8 1397 73.7
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1969.5 1395 72.5
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1723.8 1454 63.1
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1717.2 1406 63.8
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1681.0 1458 61.2
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1607.0 1411 59.8
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1582.8 1389 59.2
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1574.7 1404 58.8
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1573.9 1387 59.0
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1569.3 1394 59.7
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1554.7 1382 58.1
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1548.5 1399 56.8
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1545.8 1391 58.3
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1539.6 1392 57.8
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1525.4 1395 57.8
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1524.6 1485 55.4
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1518.1 1384 57.2
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1505.7 1396 57.0
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1496.9 1356 58.6
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1496.1 1397 55.3
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1490.3 1403 56.4
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1486.5 1392 56.2
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1486.5 1389 56.0
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1481.5 1392 56.1
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1479.9 1410 55.9
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1473.8 1381 56.9
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1457.6 1398 55.2
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1455.7 1353 57.4
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1454.1 1412 55.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1436.8 1402 54.5
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1427.2 1401 54.7
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1413.7 1406 53.8
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1402.1 1400 54.4
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1400.6 1380 53.0
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1397.9 1414 53.5
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1389.0 1409 53.4
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1387.1 1404 53.1
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1387.1 1415 53.2
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1384.4 1170 61.5
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1384.4 1393 53.1
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1380.9 1469 51.4
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1379.8 1383 52.8
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1377.8 1384 52.7
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1377.5 1386 52.5
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1374.4 1391 51.5
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1374.0 1394 52.4
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1372.5 1381 52.1
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1369.4 1408 52.4
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1367.1 1382 52.8
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1385 52.7
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1361.7 1385 51.5
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1361.3 1386 52.5
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1357.4 1389 51.6
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1343.6 1400 51.2
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1340.1 1391 50.5
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1339.3 1165 59.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1338.2 1390 52.1
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1327.0 1394 52.0
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1325.8 1478 49.5
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1306.6 1154 59.0
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1304.3 1401 50.0
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1298.1 1425 49.8
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1295.0 1362 52.7
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1285.8 1385 49.8
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1278.5 1409 50.9
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1245.3 1375 50.5
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1245.0 1395 50.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1243.4 1369 49.7
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1222.2 1366 50.1
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1190.6 1385 47.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1177.5 1403 48.0
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1175.2 1431 46.0
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1174.8 1058 57.8
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1170.6 1059 58.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1141.7 1084 55.0
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1114.8 1392 45.3
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1100.1 975 58.8
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1092.8 981 57.9
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1088.6 1409 44.9
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.6e-309 1066.6 940 58.6
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 5.1e-308 1061.6 1042 53.2
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 8.8e-260 901.4 1383 39.6
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.2e-259 901.0 583 80.3
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 7.7e-256 888.3 868 55.1
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 9.2e-225 785.0 1514 36.8
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 2.3e-223 780.4 847 50.3
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 4.6e-216 756.1 1522 34.1
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.8e-210 736.5 734 52.6
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 3.5e-208 729.9 1483 34.6
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 5.1e-207 726.1 789 51.5
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 4.2e-201 706.4 1353 35.5
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 2.4e-196 690.6 604 59.3
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 6.0e-184 649.4 596 58.2
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 9.3e-177 625.5 598 52.7
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 7.7e-171 605.9 794 45.3
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.4e-166 589.3 787 42.8
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.1e-156 557.4 589 51.8
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 5.3e-156 556.6 658 48.6
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 3.3e-150 537.3 1356 31.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.9e-146 524.2 888 39.5
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 3.4e-126 457.6 386 62.2
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 1.1e-121 442.6 306 71.2
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 3.6e-120 437.6 279 83.5
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 3.1e-103 381.3 419 49.9
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 2.2e-93 348.6 190 91.1
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 4.6e-91 340.9 265 69.4
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 8.7e-90 336.7 338 54.7
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 4.0e-87 327.8 347 51.6
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 9.0e-79 300.1 241 68.9
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 8.2e-72 276.9 262 57.6
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.5e-68 264.2 310 46.5
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 5.7e-65 254.2 196 70.4
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 1.4e-60 239.6 1624 23.0
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 3.2e-60 238.4 202 56.9
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 3.7e-56 224.9 190 66.8
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 7.2e-52 210.7 1124 24.8
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-51 208.8 259 44.8
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 6.7e-50 204.1 108 87.0
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.1e-49 203.4 299 41.1
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 7.0e-47 194.1 228 45.2
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 4.5e-46 191.4 190 52.6
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 8.5e-45 187.2 206 46.1
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.9e-44 186.0 102 87.3
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-42 178.7 606 25.6
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 4.7e-35 154.8 172 45.3
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 3.0e-34 152.1 102 76.5
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 7.0e-31 141.0 109 60.6
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 3.8e-29 135.2 251 33.9
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.6e-27 129.8 154 42.9
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 2.0e-25 122.9 69 73.9
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.3e-24 120.2 151 46.4
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 6.3e-24 117.9 79 65.8
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 5.2e-18 98.2 52 94.2
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 5.2e-18 98.2 110 45.5
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 4.1e-15 88.6 52 88.5
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 5.4e-15 88.2 63 76.2
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 1.0e-13 84.0 52 80.8
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.3e-13 83.6 63 65.1
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.3e-13 83.6 63 65.1
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.3e-13 83.6 80 46.2
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.9e-12 79.7 63 63.5
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 3.3e-12 79.0 74 58.1
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 2.1e-11 76.3 89 47.2
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.4e-10 73.6 56 66.1
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.2e-09 70.5 139 33.1
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.4e-09 68.6 54 66.7
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-09 68.2 39 64.1
Cre17.g723450 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 1.9e-07 63.2 268 26.9
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 2.4e-07 62.8 159 27.0
RcHm_v2.0_Chr3g0486531 Rosa chinensis HOM05D004810 ORTHO05D006272 2.4e-07 62.8 36 80.6
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 9.2e-07 60.8 154 27.9
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 9.2e-07 60.8 124 28.2
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.2e-06 60.5 128 27.3
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.2e-06 60.5 128 27.3
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 1.6e-06 60.1 124 28.2
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 2.0e-06 59.7 124 28.2
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 3.5e-06 58.9 29 75.9
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 3.5e-06 58.9 117 29.1
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 3.5e-06 58.9 114 29.8
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 3.5e-06 58.9 123 24.4
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 4.6e-06 58.5 124 27.4
Actinidia10458 Actinidia chinensis HOM05D000038 ORTHO05D053114 6.0e-06 58.2 43 62.8
Ciclev10001126m.g Citrus clementina HOM05D002332 ORTHO05D002509 6.0e-06 58.2 200 26.0
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 6.0e-06 58.2 116 27.6
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 7.8e-06 57.8 124 27.4
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 7.8e-06 57.8 128 26.6


User provided reference genes

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