Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 9.6e-96 353.6 193 100.0
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 8.4e-84 313.9 174 98.3
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 9.7e-80 300.4 174 90.2
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.4e-78 296.6 167 92.8
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 6.7e-73 277.7 168 88.1
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 9.7e-64 247.3 159 83.0
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 1.2e-50 203.8 174 66.1
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 1.6e-45 186.8 167 58.7
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 2.0e-45 186.4 176 62.5
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 1.6e-42 176.8 169 58.6
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 6.1e-42 174.9 169 58.0
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 8.8e-41 171.0 148 59.5
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 1.2e-40 170.6 155 60.6
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 3.4e-40 169.1 169 54.4
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 5.7e-40 168.3 185 50.8
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 3.7e-39 165.6 145 57.9
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 1.4e-38 163.7 153 56.9
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 1.4e-38 163.7 153 58.2
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 1.4e-38 163.7 156 53.8
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 1.4e-38 163.7 156 58.3
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 1.8e-38 163.3 148 59.5
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 3.1e-38 162.5 169 55.0
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 4.1e-38 162.2 150 60.7
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 4.1e-38 162.2 174 52.3
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 4.1e-38 162.2 146 59.6
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 9.1e-38 161.0 172 52.9
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 2.0e-37 159.8 166 56.6
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 2.0e-37 159.8 154 56.5
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 2.7e-37 159.5 151 57.0
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 3.5e-37 159.1 149 60.4
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 4.5e-37 158.7 154 57.1
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 4.5e-37 158.7 149 58.4
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 5.9e-37 158.3 147 55.1
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 7.7e-37 157.9 155 55.5
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 1.3e-36 157.1 150 57.3
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 1.7e-36 156.8 145 58.6
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 2.9e-36 156.0 167 54.5
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 3.8e-36 155.6 157 55.4
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 3.8e-36 155.6 148 59.5
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 3.8e-36 155.6 154 54.5
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 3.8e-36 155.6 154 55.8
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 5.0e-36 155.2 144 58.3
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 6.6e-36 154.8 145 53.8
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 8.6e-36 154.5 147 52.4
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 1.1e-35 154.1 148 57.4
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 1.1e-35 154.1 148 57.4
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 2.5e-35 152.9 163 54.6
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 3.3e-35 152.5 148 56.8
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 4.2e-35 152.1 166 54.8
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 4.2e-35 152.1 168 51.2
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 7.2e-35 151.4 148 58.1
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 9.5e-35 151.0 145 55.9
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 2.8e-34 149.4 162 50.6
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 6.1e-34 148.3 155 53.5
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.4e-33 147.1 150 51.3
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 1.4e-33 147.1 145 52.4
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 3.0e-33 146.0 149 51.0
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 4.0e-33 145.6 170 49.4
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 4.0e-33 145.6 155 54.2
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 4.0e-33 145.6 148 50.7
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 5.2e-33 145.2 145 53.1
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 5.2e-33 145.2 147 53.7
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 6.8e-33 144.8 146 52.1
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 8.9e-33 144.4 159 47.2
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 1.2e-32 144.1 151 51.7
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 1.5e-32 143.7 145 53.1
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 1.5e-32 143.7 172 50.6
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 2.6e-32 142.9 145 56.6
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 4.4e-32 142.1 144 56.2
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 4.4e-32 142.1 147 54.4
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 4.4e-32 142.1 134 54.5
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 9.8e-32 141.0 156 53.2
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 2.2e-31 139.8 147 51.0
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 2.8e-31 139.4 147 49.7
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 1.1e-30 137.5 145 52.4
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 1.4e-30 137.1 153 48.4
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 1.4e-30 137.1 150 52.0
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 1.8e-30 136.7 146 53.4
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 2.4e-30 136.3 157 47.8
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 3.2e-30 136.0 147 52.4
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 3.2e-30 136.0 146 53.4
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 4.1e-30 135.6 153 49.7
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 4.1e-30 135.6 147 53.1
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 5.4e-30 135.2 157 47.8
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 5.4e-30 135.2 126 57.9
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 7.0e-30 134.8 147 53.7
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 9.2e-30 134.4 147 51.7
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 1.2e-29 134.0 154 48.7
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 1.2e-29 134.0 154 48.7
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 1.6e-29 133.7 153 47.7
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 1.6e-29 133.7 153 47.7
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 1.6e-29 133.7 146 52.7
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 2.7e-29 132.9 151 47.0
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 5.9e-29 131.7 153 47.1
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 1.0e-28 131.0 128 54.7
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 2.3e-28 129.8 153 46.4
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 6.6e-28 128.3 168 47.0
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 6.6e-28 128.3 127 55.9
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 1.5e-27 127.1 153 45.8
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 1.5e-27 127.1 153 45.8
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 1.9e-27 126.7 142 52.8
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 1.6e-26 123.6 90 73.3
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 1.6e-26 123.6 146 50.0
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 2.3e-25 119.8 166 45.8
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 8.9e-25 117.9 119 52.9
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 3.7e-23 112.5 121 51.2
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 3.5e-21 105.9 114 50.0
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 5.6e-19 98.6 76 57.9
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 2.8e-10 69.7 134 36.6
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 8.1e-10 68.2 127 33.9
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 6.4e-07 58.5 51 54.9


User provided reference genes

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