Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 3.4e-40 168.7 150 100.0
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 9.9e-40 167.2 150 99.3
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.9e-39 165.6 150 98.7
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.1e-38 163.7 150 96.7
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 2.5e-27 125.9 150 86.0
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 5.5e-22 108.2 139 84.2
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 6.7e-20 101.3 153 73.2
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 5.7e-19 98.2 153 45.1
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.3e-18 97.1 139 77.7
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.6e-18 96.7 153 71.9
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.4e-17 93.6 51 90.2
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.8e-17 93.2 65 73.8
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 3.1e-17 92.4 153 70.6
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 4.1e-17 92.0 156 59.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 4.1e-17 92.0 148 73.6
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.2e-16 90.5 148 70.9
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.2e-16 90.5 148 70.9
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 1.5e-16 90.1 143 72.0
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.5e-16 90.1 141 74.5
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.5e-16 90.1 181 37.0
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 2.0e-16 89.7 68 66.2
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 2.6e-16 89.4 140 77.1
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 4.5e-16 88.6 56 73.2
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 5.9e-16 88.2 152 70.4
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.0e-15 87.4 56 73.2
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 1.3e-15 87.0 71 64.8
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 1.7e-15 86.7 156 66.0
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.2e-15 86.3 55 74.5
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 2.2e-15 86.3 139 73.4
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 2.2e-15 86.3 51 82.4
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.2e-15 86.3 56 73.2
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 2.9e-15 85.9 56 71.4
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 3.8e-15 85.5 69 63.8
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 6.5e-15 84.7 55 70.9
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 6.5e-15 84.7 136 73.5
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 6.5e-15 84.7 67 61.2
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 8.5e-15 84.3 58 69.0
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 8.5e-15 84.3 139 71.9
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.1e-14 84.0 66 66.7
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 1.4e-14 83.6 57 71.9
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.9e-14 83.2 58 70.7
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 1.9e-14 83.2 58 70.7
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 1.9e-14 83.2 58 67.2
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 2.5e-14 82.8 53 71.7
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 2.5e-14 82.8 58 67.2
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 2.5e-14 82.8 153 70.6
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 2.5e-14 82.8 58 65.5
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 3.2e-14 82.4 51 74.5
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 3.2e-14 82.4 51 74.5
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 4.2e-14 82.0 64 65.6
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 4.2e-14 82.0 58 67.2
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 5.5e-14 81.6 69 59.4
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 7.2e-14 81.3 65 60.0
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 7.2e-14 81.3 65 60.0
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 7.2e-14 81.3 65 60.0
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 7.2e-14 81.3 53 69.8
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 1.2e-13 80.5 51 72.5
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 1.6e-13 80.1 60 61.7
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 1.6e-13 80.1 58 63.8
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 2.1e-13 79.7 65 66.2
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 2.1e-13 79.7 52 67.3
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.1e-13 79.7 71 57.7
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 2.7e-13 79.3 59 64.4
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 2.7e-13 79.3 135 76.3
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 4.6e-13 78.6 58 63.8
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 7.9e-13 77.8 66 59.1
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.0e-12 77.4 65 61.5
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 1.0e-12 77.4 51 74.5
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 1.4e-12 77.0 60 65.0
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.8e-12 76.6 56 67.9
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 2.3e-12 76.3 58 67.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 3.0e-12 75.9 48 72.9
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 3.0e-12 75.9 53 71.7
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 3.9e-12 75.5 64 62.5
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 3.9e-12 75.5 150 68.0
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 3.9e-12 75.5 49 77.6
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 1.1e-11 73.9 53 67.9
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.5e-11 73.6 65 61.5
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 1.5e-11 73.6 137 43.8
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 2.5e-11 72.8 52 67.3
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 2.5e-11 72.8 50 66.0
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 3.3e-11 72.4 153 60.8
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 4.3e-11 72.0 65 55.4
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 9.7e-11 70.9 61 65.6
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 1.7e-10 70.1 64 57.8
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 2.8e-10 69.3 65 55.4
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 2.8e-10 69.3 61 55.7
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.8e-10 69.3 48 68.8
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 6.3e-10 68.2 64 51.6
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 1.1e-09 67.4 51 60.8
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 4.1e-09 65.5 45 66.7
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 6.9e-09 64.7 54 63.0
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 1.2e-08 63.9 52 53.8
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 1.2e-08 63.9 39 74.4
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 2.0e-08 63.2 58 55.2
Cre12.g484500 Chlamydomonas reinhardtii HOM05D007144 ORTHO05D008709 2.6e-08 62.8 45 62.2
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 7.7e-08 61.2 46 65.2
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 2.2e-07 59.7 49 67.3
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 3.8e-07 58.9 44 61.4
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 5.0e-07 58.5 62 50.0
ECA233G1600 Erigeron canadensis HOM05D001964 ORTHO05D001879 3.2e-06 55.8 51 51.0
Lsat_1_v5_gn_8_5421 Lactuca sativa HOM05D001964 ORTHO05D001879 7.2e-06 54.7 54 48.1


User provided reference genes

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