Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 2.8e-235 818.1 398 100.0
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 5.5e-231 803.9 398 98.0
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.8e-227 791.6 398 96.5
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.4e-226 789.3 398 96.7
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 2.0e-212 742.3 398 91.2
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 7.1e-186 654.1 398 78.6
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 1.2e-185 653.3 398 78.6
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 1.6e-185 652.9 398 78.4
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 2.5e-167 592.4 397 72.3
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 6.2e-166 587.8 399 70.4
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 6.5e-163 577.8 400 71.0
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 1.4e-162 576.6 391 71.1
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 3.2e-162 575.5 398 69.6
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 7.1e-162 574.3 398 69.3
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 9.7e-159 563.9 398 67.6
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 8.2e-158 560.8 399 67.9
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 2.4e-157 559.3 398 67.6
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 5.9e-156 554.7 389 67.1
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 7.7e-156 554.3 389 66.1
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 2.2e-155 552.7 399 67.4
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 3.8e-155 552.0 397 68.0
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 4.2e-154 548.5 399 67.2
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 9.4e-154 547.4 394 66.8
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.2e-153 547.0 399 66.9
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.6e-153 546.6 390 66.7
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 3.9e-152 542.0 391 67.0
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 7.4e-151 537.7 389 66.3
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 8.2e-150 534.3 398 62.6
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 1.1e-149 533.9 398 62.3
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 4.1e-149 531.9 396 63.4
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 6.9e-149 531.2 400 62.8
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 2.0e-148 529.6 398 63.6
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 2.6e-148 529.3 389 66.1
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 7.7e-148 527.7 399 62.7
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 2.2e-147 526.2 390 63.3
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 3.8e-147 525.4 396 62.1
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 5.0e-147 525.0 399 62.2
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.0e-147 525.0 393 63.1
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 6.5e-147 524.6 389 64.8
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 8.5e-147 524.2 389 64.8
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 1.4e-146 523.5 389 64.3
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 1.4e-146 523.5 398 61.8
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 7.2e-146 521.2 389 64.3
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 1.8e-144 516.5 389 64.3
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 3.9e-144 515.4 389 63.8
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 5.1e-144 515.0 389 63.5
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 1.1e-143 513.8 399 62.4
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 1.1e-143 513.8 389 63.2
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 2.0e-143 513.1 398 61.6
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 2.6e-143 512.7 399 62.9
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 5.7e-143 511.5 389 62.2
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 7.4e-143 511.1 390 63.3
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 3.7e-142 508.8 398 61.3
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 8.2e-142 507.7 399 61.7
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 4.1e-141 505.4 388 62.9
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 5.3e-141 505.0 387 63.6
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 2.6e-140 502.7 388 62.6
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 2.6e-140 502.7 389 64.3
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 5.9e-140 501.5 388 62.4
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 1.0e-139 500.7 399 60.9
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 1.5e-138 496.9 374 63.1
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 1.5e-138 496.9 374 63.1
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 1.2e-137 493.8 389 60.9
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.6e-137 493.4 383 60.8
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 5.2e-136 488.4 394 60.4
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 6.7e-136 488.0 393 60.6
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 4.4e-135 485.3 393 60.1
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 9.7e-135 484.2 400 59.8
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 2.8e-134 482.6 394 59.9
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 1.8e-133 479.9 391 59.8
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 9.1e-133 477.6 392 58.9
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 1.2e-132 477.2 403 58.6
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 6.5e-131 471.5 384 60.4
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 4.2e-130 468.8 394 58.4
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 4.2e-130 468.8 394 58.4
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 7.2e-130 468.0 398 58.3
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 9.4e-130 467.6 395 59.2
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 2.7e-129 466.1 390 60.5
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 3.6e-129 465.7 389 58.6
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 4.7e-129 465.3 395 58.7
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 4.7e-129 465.3 395 59.7
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 2.0e-127 459.9 345 62.6
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 2.7e-124 449.5 399 55.4
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 8.5e-123 444.5 385 59.0
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 2.1e-121 439.9 368 58.2
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 4.0e-120 435.6 314 65.6
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 1.4e-117 427.2 395 52.2
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.5e-116 422.5 390 54.6
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 3.8e-115 419.1 372 57.3
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 2.8e-113 412.9 395 51.6
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.4e-112 410.6 379 53.0
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-109 401.0 276 65.2
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 7.8e-108 394.8 362 54.7
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.8e-104 383.6 353 55.0
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 2.0e-103 380.2 394 50.5
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 2.9e-102 376.3 386 51.0
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 1.1e-98 364.4 243 68.3
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 4.4e-95 352.4 263 65.8
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 3.0e-91 339.7 267 62.9
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 5.1e-91 339.0 390 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 2.8e-81 306.6 364 43.7
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 1.4e-80 304.3 192 72.4
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 1.3e-78 297.7 399 39.3
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.7e-67 260.8 160 74.4
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.6e-65 254.2 248 49.6
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 2.4e-64 250.4 193 60.1
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 5.3e-64 249.2 154 81.2
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.5e-60 236.5 195 61.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 1.8e-59 234.2 195 62.6
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 1.1e-56 224.9 201 58.7
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 7.6e-55 218.8 233 47.2
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.5e-53 213.8 164 61.0
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.3e-50 203.4 150 68.0
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.2e-45 185.7 145 62.8
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.1e-44 184.1 135 60.0
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 6.1e-44 182.6 109 74.3
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 6.3e-41 172.6 426 30.3
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 9.0e-40 168.7 244 38.5
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 1.5e-39 167.9 369 30.4
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 5.0e-38 162.9 166 49.4
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 7.2e-37 159.1 136 61.0
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 4.6e-36 156.4 93 73.1
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 2.6e-31 140.6 370 27.8
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.5e-29 132.9 92 71.7
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 2.1e-28 131.0 93 71.0
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 3.8e-22 110.2 459 24.4
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 2.7e-20 104.0 85 55.3
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.1e-18 98.6 214 32.7
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 8.2e-17 92.4 60 63.3
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 6.5e-14 82.8 54 68.5
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.0e-11 75.5 85 47.1
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 5.7e-10 69.7 105 41.0
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 4.1e-08 63.5 72 48.6


User provided reference genes

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