Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.4e-125 453.0 226 100.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-120 436.4 220 98.2
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 5.9e-113 411.0 226 91.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-111 406.4 221 91.9
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-111 406.4 221 91.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.8e-108 393.7 221 89.6
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.9e-107 392.1 207 92.8
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.9e-107 392.1 207 92.8
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.7e-104 382.9 226 84.1
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.3e-78 297.0 240 64.6
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 2.9e-75 285.8 218 67.4
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.4e-74 283.5 240 62.1
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-69 266.9 136 97.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 3.1e-69 265.8 240 60.8
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.8e-67 258.8 241 56.8
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.2e-66 255.8 232 59.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 5.5e-66 255.0 233 57.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 7.1e-66 254.6 235 58.3
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.2e-65 253.8 241 57.3
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.0e-65 251.5 241 56.8
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.3e-64 249.6 207 63.3
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.5e-63 246.9 241 56.0
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.5e-63 246.1 241 56.4
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 3.7e-62 242.3 242 56.2
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 4.8e-62 241.9 267 51.3
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.1e-62 241.1 226 56.2
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.1e-61 240.7 235 55.3
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.1e-61 239.2 241 55.2
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.9e-61 238.0 241 53.9
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 6.9e-61 238.0 233 57.1
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 6.9e-61 238.0 240 54.6
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 3.4e-60 235.7 235 55.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.8e-60 235.0 226 54.9
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.0e-59 234.2 242 55.8
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.5e-58 229.6 238 55.5
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 5.5e-58 228.4 227 53.3
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 9.3e-58 227.6 235 53.6
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.6e-57 226.9 225 53.3
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.6e-57 225.3 226 55.8
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 7.9e-57 224.6 225 53.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 3.9e-56 222.2 230 51.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.9e-56 222.2 238 51.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.1e-55 220.7 232 52.2
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.1e-55 220.7 234 52.1
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.1e-55 220.7 224 52.7
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.5e-55 220.3 244 49.6
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.3e-55 218.8 207 53.6
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.6e-55 217.6 181 60.8
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 9.6e-55 217.6 234 55.1
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.6e-54 216.9 230 51.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.1e-54 216.5 226 51.3
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.1e-53 214.2 229 51.5
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.4e-53 213.8 220 51.8
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.8e-53 213.4 235 50.2
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.4e-53 213.0 237 51.1
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.2e-52 210.7 243 50.6
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.2e-52 210.7 227 52.0
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.2e-52 210.7 234 52.6
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.6e-52 209.5 240 52.1
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 5.8e-52 208.4 229 52.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.7e-51 206.8 223 51.6
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.7e-51 206.8 206 52.4
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.2e-51 206.5 234 50.0
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 2.9e-51 206.1 228 51.8
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 5.0e-51 205.3 224 49.6
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 5.0e-51 205.3 236 49.6
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-50 203.0 220 50.9
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-50 202.6 222 50.5
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 4.2e-50 202.2 289 43.3
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 7.2e-50 201.4 201 52.2
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-49 200.3 219 51.1
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.6e-49 200.3 210 50.0
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-49 199.9 222 49.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 2.7e-49 199.5 226 49.1
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 6.1e-49 198.4 215 48.8
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.3e-48 196.4 232 48.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.0e-48 196.1 194 53.1
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 6.7e-48 194.9 234 48.7
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.3e-47 192.6 257 46.7
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 2.8e-46 189.5 194 57.2
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 8.2e-46 188.0 196 53.1
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.4e-45 187.2 239 45.6
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.4e-45 187.2 227 49.3
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.9e-45 184.9 236 46.6
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-44 184.1 220 47.7
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-44 183.3 220 47.3
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.5e-44 182.2 238 46.2
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.9e-44 181.8 198 50.5
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 5.9e-44 181.8 201 52.2
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.7e-43 180.3 220 46.8
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.9e-43 179.5 232 47.0
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 8.5e-43 177.9 222 47.3
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.1e-42 177.6 234 44.0
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.5e-42 176.4 222 46.4
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 2.5e-42 176.4 225 45.8
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 4.2e-42 175.6 232 45.3
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.7e-41 172.9 201 52.2
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.6e-41 172.6 228 44.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 7.9e-41 171.4 226 42.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.5e-39 167.2 222 46.4
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.5e-39 167.2 224 44.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.5e-39 166.4 234 42.7
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 9.7e-39 164.5 226 42.5
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 3.7e-38 162.5 226 44.2
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.8e-38 162.2 243 43.2
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.4e-37 160.6 223 41.7
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.4e-37 160.6 225 44.0
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.3e-37 158.7 194 46.4
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.5e-36 157.1 233 43.3
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.5e-36 157.1 224 43.8
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-36 156.0 219 42.9
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 3.4e-36 156.0 225 43.6
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-36 155.6 169 49.1
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 4.5e-36 155.6 235 43.8
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-36 155.2 196 45.9
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.9e-36 155.2 210 45.7
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 7.7e-36 154.8 198 44.9
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 1.7e-35 153.7 197 45.2
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 2.2e-35 153.3 159 48.4
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 5.0e-35 152.1 223 43.0
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 8.5e-35 151.4 174 49.4
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 1.2e-33 147.5 179 52.0
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.4e-32 144.1 228 41.7
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.9e-32 142.5 121 58.7
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.9e-32 142.5 231 40.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 3.3e-31 139.4 141 53.9
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.3e-30 137.5 229 39.3
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.2e-30 136.7 206 42.2
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.7e-30 136.0 221 41.2
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.8e-29 133.7 227 38.8
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 3.1e-29 132.9 197 42.6
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.6e-28 130.6 97 66.0
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.5e-28 129.4 100 70.0
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.9e-26 123.6 206 39.8
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 2.7e-25 119.8 171 42.7
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-24 115.2 169 42.6
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.5e-23 111.7 157 43.3
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-21 107.5 178 39.3
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.5e-18 96.7 173 37.0
FAN28G2224 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.7e-15 85.5 148 40.5
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.1e-13 81.3 217 31.8
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.6e-12 77.4 112 41.1
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.6e-12 77.4 152 34.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-12 75.5 105 42.9
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-11 74.3 112 38.4
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.8e-11 72.8 105 41.9
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 5.0e-11 72.4 147 30.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 5.0e-11 72.4 81 49.4
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.9e-10 70.5 60 60.0
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.2e-09 67.8 147 29.9
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-09 66.2 77 48.1
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-09 66.2 77 48.1
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.6e-09 66.2 39 82.1
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.6e-09 66.2 39 82.1
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.7e-07 58.9 91 38.5
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.5e-07 58.5 98 41.8
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-06 57.8 91 38.5
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 6.3e-06 55.5 113 33.6


User provided reference genes

Program Settings