Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 3.1e-66 255.0 129 100.0
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.7e-59 231.5 121 96.7
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 5.3e-58 227.6 127 90.6
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.1e-58 226.9 127 89.8
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 8.5e-56 220.3 127 87.4
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.7e-54 215.3 122 88.5
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.9e-54 213.8 132 85.6
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-53 213.0 119 89.9
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 6.7e-53 210.7 127 83.5
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.1e-52 209.9 127 82.7
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.7e-51 206.1 127 79.5
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 1.1e-50 203.4 127 78.7
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 2.4e-50 202.2 127 78.0
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.2e-49 199.9 127 78.0
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 1.6e-49 199.5 129 78.3
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 5.9e-49 197.6 127 78.0
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 1.0e-48 196.8 127 76.4
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.7e-48 196.1 127 76.4
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.7e-48 196.1 127 76.4
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 2.2e-48 195.7 127 77.2
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 2.2e-48 195.7 127 76.4
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.9e-48 195.3 127 76.4
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 2.9e-48 195.3 127 76.4
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 2.9e-48 195.3 127 78.0
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 2.9e-48 195.3 127 75.6
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.8e-48 194.9 127 74.8
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 3.8e-48 194.9 127 76.4
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 5.0e-48 194.5 127 75.6
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.5e-48 194.1 127 75.6
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 8.5e-48 193.7 126 76.2
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.1e-47 193.4 127 76.4
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.9e-47 192.6 127 74.8
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 2.5e-47 192.2 127 74.0
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 2.5e-47 192.2 127 74.0
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.5e-47 192.2 127 74.8
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.2e-47 191.8 127 74.8
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.2e-47 191.4 127 71.7
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 7.2e-47 190.7 127 74.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 7.2e-47 190.7 127 74.8
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.2e-47 190.7 127 74.8
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 9.4e-47 190.3 127 74.8
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 9.4e-47 190.3 127 74.0
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.6e-46 189.5 127 76.4
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.6e-46 189.5 127 74.8
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.6e-46 189.5 127 74.8
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 2.1e-46 189.1 124 75.8
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 2.1e-46 189.1 127 74.0
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.1e-46 189.1 127 74.0
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.1e-46 189.1 127 74.0
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 3.6e-46 188.3 127 74.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 6.1e-46 187.6 127 71.7
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 8.0e-46 187.2 127 72.4
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 8.0e-46 187.2 127 74.0
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.0e-45 186.8 127 73.2
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 1.4e-45 186.4 127 72.4
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.4e-45 186.4 127 73.2
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 2.3e-45 185.7 119 77.3
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 3.0e-45 185.3 123 71.5
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 3.0e-45 185.3 127 72.4
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 8.8e-45 183.7 127 70.9
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.6e-44 182.2 127 70.9
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 2.6e-44 182.2 119 75.6
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 3.3e-44 181.8 119 75.6
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 4.4e-44 181.4 119 74.8
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 4.4e-44 181.4 127 70.9
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.7e-44 181.0 121 72.7
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 5.7e-44 181.0 119 73.1
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 7.5e-44 180.6 127 70.9
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 7.5e-44 180.6 127 70.1
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 1.3e-43 179.9 127 70.1
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 1.3e-43 179.9 127 70.1
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 1.3e-43 179.9 127 70.1
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.3e-43 179.9 127 69.3
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.7e-43 179.5 127 68.5
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 1.7e-43 179.5 127 70.9
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.7e-43 179.5 127 68.5
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 1.7e-43 179.5 127 71.7
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.7e-43 179.5 120 74.2
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.7e-43 179.5 127 68.5
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.2e-43 179.1 117 73.5
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 2.8e-43 178.7 127 69.3
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 2.8e-43 178.7 119 74.8
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 4.8e-43 177.9 127 68.5
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 6.3e-43 177.6 127 69.3
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 8.2e-43 177.2 119 73.1
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 8.2e-43 177.2 119 73.9
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 8.2e-43 177.2 119 73.1
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 8.2e-43 177.2 119 73.9
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.1e-42 176.8 119 75.6
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 1.1e-42 176.8 128 69.5
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 1.4e-42 176.4 127 69.3
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.4e-42 176.4 119 72.3
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 2.4e-42 175.6 119 73.1
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 3.1e-42 175.3 119 72.3
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 4.1e-42 174.9 119 68.9
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.3e-42 174.5 127 69.3
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.2e-41 173.3 127 67.7
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-41 172.6 122 67.2
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 2.0e-41 172.6 127 68.5
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 1.0e-40 170.2 119 69.7
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.7e-40 169.5 127 64.6
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 2.9e-40 168.7 127 64.6
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 8.5e-40 167.2 119 67.2
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 8.5e-40 167.2 121 68.6
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 8.5e-40 167.2 121 68.6
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.1e-39 166.8 122 68.9
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.5e-39 165.6 144 59.7
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.2e-39 165.2 117 67.5
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.6e-38 162.9 119 66.4
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 3.6e-38 161.8 119 66.4
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 3.6e-38 161.8 148 60.1
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 6.1e-38 161.0 119 67.2
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 8.0e-38 160.6 119 64.7
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 8.0e-38 160.6 126 65.9
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 4.4e-36 154.8 119 63.9
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.8e-35 151.4 103 68.9
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 6.3e-35 151.0 129 62.0
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.4e-34 149.1 105 66.7
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.2e-33 146.7 105 70.5
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 2.3e-32 142.5 133 60.2
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 7.2e-31 137.5 130 53.8
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.8e-30 135.6 94 68.1
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 8.0e-30 134.0 107 62.6
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 8.0e-30 134.0 93 67.7
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 2.3e-29 132.5 113 54.0
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.0e-29 131.7 94 66.0
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 4.4e-28 128.3 141 48.9
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 7.5e-28 127.5 97 64.9
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 7.5e-28 127.5 100 63.0
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.0e-24 117.1 92 66.3
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 2.9e-24 115.5 113 52.2
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 3.8e-24 115.2 139 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 2.5e-23 112.5 97 54.6
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.4e-21 106.7 96 60.4
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.3e-13 79.3 51 74.5


User provided reference genes

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