Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 4.7e-302 1040.4 536 100.0
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 7.9e-265 916.8 583 84.6
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.5e-258 895.2 569 83.5
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 9.7e-255 883.2 545 85.5
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.5e-250 868.6 567 81.8
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 5.3e-245 850.9 511 85.9
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 1.2e-212 743.4 510 75.1
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 3.3e-210 735.3 506 72.3
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 5.0e-203 711.4 507 69.6
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 9.8e-199 697.2 511 69.7
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 6.4e-198 694.5 491 70.1
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 1.9e-197 693.0 490 68.6
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 1.9e-197 693.0 493 69.6
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 3.2e-197 692.2 485 69.7
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 4.1e-197 691.8 510 68.0
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 5.4e-197 691.4 480 70.2
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 3.5e-196 688.7 492 67.9
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 4.6e-196 688.3 510 66.5
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 1.3e-195 686.8 492 69.7
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 1.1e-194 683.7 509 68.6
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 9.5e-194 680.6 504 67.5
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 6.2e-193 677.9 510 66.7
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 1.4e-192 676.8 508 65.9
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 2.3e-192 676.0 507 67.9
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 3.1e-192 675.6 507 68.2
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 8.9e-192 674.1 509 67.0
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 8.9e-192 674.1 511 67.1
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 3.4e-191 672.2 490 66.7
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 1.7e-190 669.8 487 67.1
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 1.9e-189 666.4 487 67.4
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 1.9e-189 666.4 490 67.3
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 3.2e-189 665.6 517 65.2
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 4.1e-189 665.2 508 65.7
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 5.4e-189 664.8 488 67.2
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 1.6e-188 663.3 513 67.1
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 2.7e-188 662.5 507 67.3
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 3.5e-188 662.1 507 65.7
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 3.9e-187 658.7 521 63.7
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 6.6e-187 657.9 508 65.7
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.5e-186 656.8 508 65.7
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 1.9e-186 656.4 543 64.1
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.9e-186 656.4 492 65.9
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 2.5e-186 656.0 476 68.9
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 2.5e-186 656.0 492 65.9
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 5.6e-186 654.8 508 65.6
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 9.6e-186 654.1 509 66.0
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 1.2e-185 653.7 474 67.5
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 2.8e-185 652.5 475 66.9
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 4.7e-185 651.7 492 65.7
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 8.1e-185 651.0 492 66.3
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 8.1e-185 651.0 443 70.0
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 8.9e-184 647.5 505 63.8
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 8.9e-184 647.5 493 65.9
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 2.6e-183 646.0 533 63.8
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 2.2e-182 642.9 487 64.7
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 2.9e-182 642.5 491 64.8
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 1.4e-181 640.2 476 66.2
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 7.8e-180 634.4 491 63.7
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 3.9e-179 632.1 491 63.5
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 3.9e-179 632.1 485 63.9
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 3.9e-179 632.1 494 66.2
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 1.5e-178 630.2 491 62.7
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 1.9e-178 629.8 491 63.3
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 5.6e-178 628.2 491 63.7
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 1.3e-177 627.1 505 64.6
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 2.8e-177 625.9 496 64.9
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 2.4e-176 622.9 506 62.5
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 5.3e-176 621.7 492 62.8
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 2.9e-174 615.9 507 62.3
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 1.9e-173 613.2 509 63.1
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 2.4e-173 612.8 479 63.7
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 3.2e-173 612.5 492 62.2
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 1.2e-172 610.5 437 66.8
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 6.0e-172 608.2 497 61.6
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 5.1e-171 605.1 494 61.9
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 1.9e-170 603.2 472 64.8
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 8.4e-166 587.8 493 61.1
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 7.1e-165 584.7 469 64.4
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.2e-164 583.9 510 57.5
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 1.6e-164 583.6 494 61.1
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 1.8e-163 580.1 500 60.8
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 2.3e-163 579.7 479 61.0
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 2.5e-162 576.2 701 48.2
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 2.0e-159 566.6 509 57.0
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 3.8e-158 562.4 448 64.1
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 1.4e-157 560.5 507 59.8
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 3.0e-155 552.7 393 73.8
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 6.7e-155 551.6 422 64.9
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 1.6e-153 547.0 392 72.4
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 9.0e-152 541.2 494 57.5
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 3.3e-146 522.7 375 66.7
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.0e-142 511.1 368 70.4
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 2.5e-133 479.9 345 66.7
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 2.5e-125 453.4 337 66.5
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 3.2e-125 453.0 476 49.6
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 4.4e-122 442.6 500 47.6
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 7.7e-119 431.8 289 70.2
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 4.0e-115 419.5 297 67.7
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 6.3e-113 412.1 287 68.3
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 1.4e-112 411.0 280 67.9
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 3.5e-111 406.4 515 42.9
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 8.6e-110 401.7 495 45.1
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 6.8e-107 392.1 295 62.4
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 1.7e-105 387.5 254 72.4
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 7.0e-104 382.1 383 54.8
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 9.5e-101 371.7 439 49.2
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 1.2e-98 364.8 256 71.1
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 8.0e-92 342.0 283 61.1
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 2.1e-76 290.8 292 50.7
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 1.5e-69 268.1 191 67.5
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 1.5e-69 268.1 191 67.5
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 8.1e-68 262.3 439 37.4
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.1e-64 251.9 323 47.4
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 5.1e-62 243.0 494 32.6
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 5.4e-56 223.0 447 34.2
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 8.7e-54 215.7 464 31.9
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 1.4e-51 208.4 175 65.1
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 3.4e-50 203.8 174 66.7
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 8.4e-49 199.1 142 68.3
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.3e-46 191.0 151 66.9
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 3.1e-43 180.6 144 55.6
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 3.1e-43 180.6 100 85.0
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 8.4e-41 172.6 194 45.4
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 3.3e-37 160.6 130 70.0
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 3.3e-29 134.0 124 49.2
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.2e-26 125.6 102 63.7
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 6.5e-25 119.8 96 56.2
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 1.0e-22 112.5 73 69.9
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.3e-17 95.5 59 78.0
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 2.2e-17 94.7 113 54.9
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.2e-16 90.9 59 74.6
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 5.5e-16 90.1 66 63.6
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 4.4e-13 80.5 48 75.0
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 5.7e-13 80.1 130 42.3
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 7.4e-13 79.7 74 51.4
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 7.4e-13 79.7 44 81.8
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 1.3e-12 79.0 130 41.5
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 2.2e-12 78.2 375 22.4
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 2.2e-12 78.2 56 69.6
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 1.2e-10 72.4 47 66.0
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 1.6e-10 72.0 73 56.2
Lj4A14T51 Lonicera japonica HOM05D005198 ORTHO05D006839 2.1e-07 61.6 61 67.2


User provided reference genes

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