Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25241 Fragaria vesca HOM05D066387 ORTHO05D046271 1.1e-116 423.3 209 100.0
FAN26G3329 Fragaria x ananassa HOM05D012211 ORTHO05D046271 4.0e-47 192.2 104 91.3
FAN26G3273 Fragaria x ananassa HOM05D066387 ORTHO05D201042 6.0e-27 125.2 61 98.4
RcHm_v2.0_Chr2g0090081 Rosa chinensis HOM05D003355 ORTHO05D015652 9.3e-20 101.3 144 43.8
FAN04G2164 Fragaria x ananassa HOM05D003355 ORTHO05D015652 2.1e-16 90.1 147 40.8
RcHm_v2.0_Chr3g0469061 Rosa chinensis HOM05D003355 ORTHO05D022549 2.6e-14 83.2 174 35.1
RcHm_v2.0_Chr3g0469081 Rosa chinensis HOM05D003355 ORTHO05D022549 2.6e-14 83.2 174 35.1
FvH4_3g36450 Fragaria vesca HOM05D012211 ORTHO05D013882 3.4e-14 82.8 166 37.3
FAN13G2254 Fragaria x ananassa HOM05D011179 ORTHO05D017929 2.2e-13 80.1 159 37.1
FAN13G3208 Fragaria x ananassa HOM05D011179 ORTHO05D017929 2.2e-13 80.1 159 37.1
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 2.2e-13 80.1 156 39.1
FvH4_5g09780 Fragaria vesca HOM05D011179 ORTHO05D017929 2.9e-13 79.7 164 36.6
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 2.9e-13 79.7 163 37.4
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 5.0e-13 79.0 157 36.3
RcHm_v2.0_Chr7g0191051 Rosa chinensis HOM05D003355 ORTHO05D347038 6.5e-13 78.6 155 34.8
MD03G1170900 Malus domestica HOM05D003355 ORTHO05D015652 8.4e-13 78.2 163 37.4
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 1.4e-12 77.4 138 38.4
FvH4_3g36460 Fragaria vesca HOM05D012211 ORTHO05D197262 1.9e-12 77.0 137 40.9
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 2.7e-11 73.2 135 37.0
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 3.5e-11 72.8 169 35.5
FvH4_2g01170 Fragaria vesca HOM05D003355 ORTHO05D025419 3.5e-11 72.8 169 32.0
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 4.6e-11 72.4 117 40.2
FAN08G1058 Fragaria x ananassa HOM05D011179 ORTHO05D017929 4.6e-11 72.4 148 35.8
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 4.6e-11 72.4 117 40.2
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 4.6e-11 72.4 156 35.3
FAN18G3963 Fragaria x ananassa HOM05D003355 ORTHO05D015652 6.1e-11 72.0 106 44.3
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 7.9e-11 71.6 169 34.3
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 1.0e-10 71.2 169 35.5
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 1.3e-10 70.9 168 34.5
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 1.8e-10 70.5 168 33.9
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 1.8e-10 70.5 169 34.9
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 2.3e-10 70.1 160 35.6
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 2.3e-10 70.1 155 34.8
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 3.0e-10 69.7 168 34.5
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 3.0e-10 69.7 156 35.3
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 3.0e-10 69.7 165 34.5
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 3.9e-10 69.3 169 33.7
FvH4_6g42520 Fragaria vesca HOM05D012211 ORTHO05D029661 5.1e-10 68.9 163 34.4
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 5.1e-10 68.9 169 35.5
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 5.1e-10 68.9 174 33.9
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 5.1e-10 68.9 169 33.7
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 6.7e-10 68.6 168 33.3
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 8.7e-10 68.2 168 33.9
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 8.7e-10 68.2 168 33.9
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 8.7e-10 68.2 165 34.5
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 8.7e-10 68.2 169 33.7
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 8.7e-10 68.2 165 33.3
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 8.7e-10 68.2 165 33.3
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 8.7e-10 68.2 174 33.3
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 1.1e-09 67.8 171 33.3
RcHm_v2.0_Chr7g0223281 Rosa chinensis HOM05D011179 ORTHO05D017929 1.1e-09 67.8 150 35.3
FAN14G2936 Fragaria x ananassa HOM05D012211 ORTHO05D029661 1.5e-09 67.4 163 33.7
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 1.5e-09 67.4 165 33.9
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 3.3e-09 66.2 168 32.7
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 4.3e-09 65.9 168 32.7
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 4.3e-09 65.9 168 32.7
FvH4_5g09770 Fragaria vesca HOM05D011179 ORTHO05D015652 4.3e-09 65.9 156 32.7
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 4.3e-09 65.9 168 32.7
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 4.3e-09 65.9 168 32.7
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 4.3e-09 65.9 168 32.7
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 5.7e-09 65.5 166 32.5
FvH4_5g22900 Fragaria vesca HOM05D003355 ORTHO05D015652 1.3e-08 64.3 144 36.8
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 1.3e-08 64.3 168 32.1
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 1.6e-08 63.9 88 43.2
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 1.6e-08 63.9 168 31.5
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 2.2e-08 63.5 165 33.3
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 2.8e-08 63.2 168 31.0
FAN24G2229 Fragaria x ananassa HOM05D003355 ORTHO05D025419 4.8e-08 62.4 191 28.8
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 4.8e-08 62.4 168 31.5
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 4.8e-08 62.4 169 32.5
FAN13G3109 Fragaria x ananassa HOM05D000142 ORTHO05D000124 8.2e-08 61.6 158 33.5
FAN08G0872 Fragaria x ananassa HOM05D011179 ORTHO05D017929 1.8e-07 60.5 170 30.6
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 1.2e-06 57.8 131 31.3
FvH4_2g08141 Fragaria vesca HOM05D003355 ORTHO05D197404 2.0e-06 57.0 134 31.3
FAN18G4198 Fragaria x ananassa HOM05D017954 ORTHO05D045885 2.6e-06 56.6 178 30.9
FAN27G2687 Fragaria x ananassa HOM05D003355 ORTHO05D025419 2.6e-06 56.6 128 29.7
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 2.6e-06 56.6 164 32.9
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 5.9e-06 55.5 158 32.9


User provided reference genes

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