Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24930 Fragaria vesca HOM05D000682 ORTHO05D000510 1.7e-39 165.6 86 100.0
FvH4_6g17410 Fragaria vesca HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
FAN02G3118 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
FAN05G4196 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
FAN05G5338 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
FAN09G1349 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
FAN09G2058 Fragaria x ananassa HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
RcHm_v2.0_Chr3g0471661 Rosa chinensis HOM05D000682 ORTHO05D000510 1.0e-12 76.6 59 74.6
QL07p041072 Quercus lobata HOM05D000682 ORTHO05D000510 3.8e-12 74.7 59 69.5
Haze_19507 Corylus avellana HOM05D000682 ORTHO05D000510 1.5e-11 72.8 59 67.8
Prupe.7G121400 Prunus persica HOM05D000682 ORTHO05D000510 2.5e-11 72.0 59 69.5
THA.LOC104805133 Tarenaya hassleriana HOM05D000682 ORTHO05D000510 4.2e-11 71.2 59 66.1
THA.LOC104827497 Tarenaya hassleriana HOM05D000682 ORTHO05D000510 4.2e-11 71.2 59 67.8
CiPaw.09G006500 Carya illinoinensis HOM05D000682 ORTHO05D000510 5.5e-11 70.9 58 70.7
Dinv35849 Davidia involucrata HOM05D000682 ORTHO05D000510 5.5e-11 70.9 59 64.4
Cpa.g.sc5.109 Carica papaya HOM05D000682 ORTHO05D000510 7.2e-11 70.5 59 66.1
Cfa016505 Carpinus fangiana HOM05D000682 ORTHO05D000510 7.2e-11 70.5 59 64.4
Aa31LG5G21830 Aethionema arabicum HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 67.8
AL4G32810 Arabidopsis lyrata HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 67.8
Carub.0004s1845 Capsella rubella HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 67.8
ECA248G2733 Erigeron canadensis HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 67.8
FAN14G4167 Fragaria x ananassa HOM05D000682 ORTHO05D000510 9.5e-11 70.1 76 57.9
MD12G1100900 Malus domestica HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 69.5
Solyc09g008780.4 Solanum lycopersicum HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 66.1
Sopen09g003570 Solanum pennellii HOM05D000682 ORTHO05D000510 9.5e-11 70.1 59 66.1
Actinidia11316 Actinidia chinensis HOM05D000682 ORTHO05D000510 1.2e-10 69.7 59 64.4
HanXRQChr11g0350921 Helianthus annuus HOM05D000682 ORTHO05D000510 1.2e-10 69.7 59 66.1
ClCG04G009650 Citrullus lanatus HOM05D000682 ORTHO05D000510 1.6e-10 69.3 59 64.4
Thhalv10016620m.g Eutrema salsugineum HOM05D000682 ORTHO05D000510 1.6e-10 69.3 59 66.1
Sed0014735 Sechium edule HOM05D000682 ORTHO05D000510 1.6e-10 69.3 59 64.4
Sc20g0005890 Simmondsia chinensis HOM05D000682 ORTHO05D000510 1.6e-10 69.3 59 66.1
AT2G36630 Arabidopsis thaliana HOM05D000682 ORTHO05D000510 2.1e-10 68.9 59 66.1
CARHR130910 Cardamine hirsuta HOM05D000682 ORTHO05D000510 2.1e-10 68.9 59 66.1
Eucgr.A01580 Eucalyptus grandis HOM05D000682 ORTHO05D000510 2.1e-10 68.9 59 62.7
HanXRQChr01g0028131 Helianthus annuus HOM05D000682 ORTHO05D000510 2.1e-10 68.9 59 64.4
Phvul.007G225100 Phaseolus vulgaris HOM05D000682 ORTHO05D000510 2.1e-10 68.9 58 67.2
VMungo0720G0041 Vigna mungo HOM05D000682 ORTHO05D000510 2.1e-10 68.9 58 67.2
GSVIVG01033741001 Vitis vinifera HOM05D000682 ORTHO05D000510 2.1e-10 68.9 59 64.4
Lj5g0020352 Lotus japonicus HOM05D000682 ORTHO05D000510 2.8e-10 68.6 58 62.1
Oeu040558.1 Olea europaea HOM05D000682 ORTHO05D000510 2.8e-10 68.6 59 64.4
Sp4g18910 Schrenkiella parvula HOM05D000682 ORTHO05D000510 2.8e-10 68.6 59 66.1
EL10Ac7g16755 Beta vulgaris HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 64.4
MELO3C024504.2 Cucumis melo HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 62.7
CsaV3_6G040290 Cucumis sativus L. HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 62.7
Lsat_1_v5_gn_1_50821 Lactuca sativa HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 66.1
Lj3A1007T27 Lonicera japonica HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 66.1
Nitab4.5_0000680g0090 Nicotiana tabacum HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 64.4
Oeu030470.1 Olea europaea HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 64.4
Peaxi162Scf00500g00714 Petunia axillaris HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 66.1
PGR004G2406 Punica granatum HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 64.4
SalBow3G2182 Salvia bowleyana HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 66.1
PGSC0003DMG400002730 Solanum tuberosum HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 64.4
TAR633G0393 Trochodendron aralioides HOM05D000682 ORTHO05D000510 3.6e-10 68.2 59 62.7
Aqoxy2G01517 Aquilegia oxysepala HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 62.7
BcaB02g09344 Brassica carinata HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 66.1
Duzib128G1939 Durio zibethinus HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 64.4
ECA233G1485 Erigeron canadensis HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 61.0
Migut.L01739 Erythranthe guttata HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 64.4
FAN23G2786 Fragaria x ananassa HOM05D000682 ORTHO05D000510 4.7e-10 67.8 41 87.8
SalBow3G0324 Salvia bowleyana HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 66.1
Thecc.05G077800 Theobroma cacao HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 64.4
unitig_578.g15776 Utricularia gibba HOM05D000682 ORTHO05D000510 4.7e-10 67.8 59 66.1
CiPaw.10G003100 Carya illinoinensis HOM05D000682 ORTHO05D000510 6.1e-10 67.4 58 63.8
AUR62037911 Chenopodium quinoa HOM05D000682 ORTHO05D000510 6.1e-10 67.4 59 64.4
AUR62040164 Chenopodium quinoa HOM05D000682 ORTHO05D000510 6.1e-10 67.4 59 64.4
Glyma.13G149100 Glycine max HOM05D000682 ORTHO05D000510 6.1e-10 67.4 58 63.8
Glyma.19G189500 Glycine max HOM05D000682 ORTHO05D000510 6.1e-10 67.4 59 62.7
Lsat_1_v5_gn_6_29021 Lactuca sativa HOM05D000682 ORTHO05D000510 6.1e-10 67.4 59 62.7
Nn2g13946 Nelumbo nucifera HOM05D000682 ORTHO05D000510 6.1e-10 67.4 58 63.8
A05p09240 Brassica napus HOM05D000682 ORTHO05D000510 8.0e-10 67.0 59 64.4
BraA05t19880Z Brassica rapa HOM05D000682 ORTHO05D000510 8.0e-10 67.0 59 64.4
COL.COLO4_22278 Corchorus olitorius HOM05D000682 ORTHO05D000510 8.0e-10 67.0 59 62.7
HanXRQChr13g0400061 Helianthus annuus HOM05D000682 ORTHO05D000510 8.0e-10 67.0 59 62.7
Rhsim03G0084700 Rhododendron simsii HOM05D000682 ORTHO05D000510 8.0e-10 67.0 59 62.7
TWI74G0165 Tripterygium wilfordii HOM05D000682 ORTHO05D000510 8.0e-10 67.0 59 61.0
vmacro07345 Vaccinium macrocarpon HOM05D000682 ORTHO05D000510 8.0e-10 67.0 58 63.8
Aqoxy1G01003 Aquilegia oxysepala HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 62.7
BcaC02g11776 Brassica carinata HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 64.4
C04p11510 Brassica napus HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 64.4
BolC4t22801H Brassica oleracea HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 64.4
CAN.G824.53 Capsicum annuum HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 62.7
Ciclev10011694m.g Citrus clementina HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 62.7
Gohir.A01G140200 Gossypium hirsutum HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 62.7
Gorai.002G160300 Gossypium raimondii HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 62.7
Nn6g35108 Nelumbo nucifera HOM05D000682 ORTHO05D000510 1.0e-09 66.6 59 62.7
Cc06_g04970 Coffea canephora HOM05D000682 ORTHO05D000510 1.4e-09 66.2 59 61.0
Duzib093G1683 Durio zibethinus HOM05D000682 ORTHO05D000510 1.4e-09 66.2 59 64.4
Lj3A1006G33 Lonicera japonica HOM05D000682 ORTHO05D000510 1.4e-09 66.2 58 65.5
Ah.08g211110 Amaranthus hybridus HOM05D000682 ORTHO05D000510 1.8e-09 65.9 59 62.7
Lj2A126T24 Lonicera japonica HOM05D000682 ORTHO05D000510 1.8e-09 65.9 59 61.0
Manes.09G057800 Manihot esculenta HOM05D000682 ORTHO05D000510 1.8e-09 65.9 59 59.3
Psat6g077480 Pisum sativum HOM05D000682 ORTHO05D000510 1.8e-09 65.9 58 62.1
SEGI_33938 Sequoiadendron giganteum HOM05D000682 ORTHO05D000510 1.8e-09 65.9 58 63.8
Glyma.10G064500 Glycine max HOM05D000682 ORTHO05D000510 2.3e-09 65.5 58 62.1
Gohir.A04G067400 Gossypium hirsutum HOM05D000682 ORTHO05D000510 2.3e-09 65.5 59 62.7
Gohir.D04G106100 Gossypium hirsutum HOM05D000682 ORTHO05D000510 2.3e-09 65.5 59 62.7
Gorai.009G410000 Gossypium raimondii HOM05D000682 ORTHO05D000510 2.3e-09 65.5 59 62.7
PSO339G4666 Papaver somniferum HOM05D000682 ORTHO05D000510 2.3e-09 65.5 59 57.6
PSO801G0164 Papaver somniferum HOM05D000682 ORTHO05D000510 2.3e-09 65.5 59 57.6
Hund04086 Selenicereus undatus HOM05D000682 ORTHO05D000510 2.3e-09 65.5 59 61.0
MSTRG.19214 Avicennia marina HOM05D000682 ORTHO05D000510 3.0e-09 65.1 59 59.3
Nitab4.5_0009405g0040 Nicotiana tabacum HOM05D000682 ORTHO05D000510 3.0e-09 65.1 59 61.0
Os03g0726500 Oryza sativa ssp. japonica HOM05D000682 ORTHO05D000510 3.0e-09 65.1 59 62.7
Hund20422 Selenicereus undatus HOM05D000682 ORTHO05D000510 3.0e-09 65.1 59 59.3
VMungo1383G3728 Vigna mungo HOM05D000682 ORTHO05D000510 3.0e-09 65.1 59 61.0
BcaB01g03821 Brassica carinata HOM05D000682 ORTHO05D000510 4.0e-09 64.7 59 62.7
Ca_11605_v3 Cicer arietinum L. HOM05D000682 ORTHO05D000510 4.0e-09 64.7 58 62.1
Ca_12339_v3 Cicer arietinum L. HOM05D000682 ORTHO05D000510 4.0e-09 64.7 58 62.1
Dinv37374 Davidia involucrata HOM05D000682 ORTHO05D000510 4.0e-09 64.7 59 61.0
Migut.J00490 Erythranthe guttata HOM05D000682 ORTHO05D000510 4.0e-09 64.7 59 59.3
Manes.08G018100 Manihot esculenta HOM05D000682 ORTHO05D000510 4.0e-09 64.7 58 60.3
arahy.Tifrunner.gnm1.ann1.1HLM41 Arachis hypogaea HOM05D000682 ORTHO05D000510 5.2e-09 64.3 58 62.1
arahy.Tifrunner.gnm1.ann1.Q4JBZ8 Arachis hypogaea HOM05D000682 ORTHO05D000510 5.2e-09 64.3 58 62.1
DCAR_020789 Daucus carota HOM05D000682 ORTHO05D000510 5.2e-09 64.3 59 59.3
Peaxi162Scf00110g00104 Petunia axillaris HOM05D000682 ORTHO05D000510 5.2e-09 64.3 59 62.7
PGR142G2694 Punica granatum HOM05D000682 ORTHO05D000510 5.2e-09 64.3 58 62.1
TPR.G5648 Trifolium pratense HOM05D000682 ORTHO05D000510 5.2e-09 64.3 58 60.3
TWI77G0509 Tripterygium wilfordii HOM05D000682 ORTHO05D000510 5.2e-09 64.3 59 57.6
Lalb_Chr01g0018461 Lupinus albus HOM05D000682 ORTHO05D000510 6.8e-09 63.9 59 62.7
Sabra06G0092800 Salix brachista HOM05D000682 ORTHO05D000510 6.8e-09 63.9 58 62.1
ATR0665G469 Amborella trichopoda HOM05D000682 ORTHO05D000510 8.9e-09 63.5 59 62.7
PSO339G0002 Papaver somniferum HOM05D000682 ORTHO05D000510 8.9e-09 63.5 59 59.3
Medtr1g061710 Medicago truncatula HOM05D000682 ORTHO05D000510 1.2e-08 63.2 57 61.4
Lalb_Chr02g0155301 Lupinus albus HOM05D000682 ORTHO05D000510 1.5e-08 62.8 57 59.6
PSO063G3199 Papaver somniferum HOM05D000682 ORTHO05D000510 1.5e-08 62.8 59 59.3
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 3.4e-08 61.6 59 59.3
CDE02G3033 Ceratophyllum demersum HOM05D000682 ORTHO05D000510 4.4e-08 61.2 58 60.3
Hma1.2p1_0084F.1_g042960 Hydrangea macrophylla HOM05D000682 ORTHO05D000510 7.5e-08 60.5 58 56.9
Potri.006G117900 Populus trichocarpa HOM05D000682 ORTHO05D000510 9.8e-08 60.1 57 59.6
Zm00001eb055880 Zea mays HOM05D000682 ORTHO05D000510 9.8e-08 60.1 59 61.0
DCAR_015023 Daucus carota HOM05D000682 ORTHO05D000510 1.3e-07 59.7 59 55.9
CANSAT80G2913 Cannabis sativa HOM05D000682 ORTHO05D000510 4.9e-07 57.8 57 56.1
Ca_08950_v3 Cicer arietinum L. HOM05D000682 ORTHO05D000510 4.9e-07 57.8 58 60.3
TPR.G31494 Trifolium pratense HOM05D000682 ORTHO05D000510 6.3e-07 57.4 58 58.6
Lj1g0026687 Lotus japonicus HOM05D000682 ORTHO05D000510 8.3e-07 57.0 58 56.9
Medtr7g103300 Medicago truncatula HOM05D000682 ORTHO05D000510 8.3e-07 57.0 58 58.6
Peaxi162Scf00523g00026 Petunia axillaris HOM05D000682 ORTHO05D000510 8.3e-07 57.0 52 55.8
Psat3g037400 Pisum sativum HOM05D000682 ORTHO05D000510 8.3e-07 57.0 58 58.6
CDE02G1887 Ceratophyllum demersum HOM05D000682 ORTHO05D000510 1.4e-06 56.2 81 45.7
Nitab4.5_0006314g0030 Nicotiana tabacum HOM05D000682 ORTHO05D000510 2.4e-06 55.5 92 41.3
PSO782G2381 Papaver somniferum HOM05D000682 ORTHO05D000510 5.4e-06 54.3 58 55.2
Glyma.13G357800 Glycine max HOM05D000682 ORTHO05D000510 9.2e-06 53.5 58 55.2
Glyma.15G015600 Glycine max HOM05D000682 ORTHO05D000510 9.2e-06 53.5 58 55.2
Rhsim12G0199800 Rhododendron simsii HOM05D000682 ORTHO05D000510 9.2e-06 53.5 58 50.0
Hund06623 Selenicereus undatus HOM05D000682 ORTHO05D000510 9.2e-06 53.5 58 55.2


User provided reference genes

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