Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24581 Fragaria vesca HOM05D011771 ORTHO05D014214 0.0e+00 1351.3 677 100.0
FvH4_7g14385 Fragaria vesca HOM05D011771 ORTHO05D014214 2.8e-65 254.2 205 64.9
FvH4_6g37662 Fragaria vesca HOM05D011771 ORTHO05D014214 1.0e-59 235.7 173 68.2
FvH4_4g08481 Fragaria vesca HOM05D015922 ORTHO05D001739 7.9e-52 209.5 142 74.6
FvH4_4g08541 Fragaria vesca HOM05D011771 ORTHO05D014214 7.9e-44 183.0 355 38.9
FvH4_6g39361 Fragaria vesca HOM05D011771 ORTHO05D014214 1.3e-43 182.2 355 38.9
FvH4_2g20031 Fragaria vesca HOM05D011771 ORTHO05D014214 6.7e-43 179.9 285 44.6
FvH4_3g29863 Fragaria vesca HOM05D011771 ORTHO05D014214 1.4e-37 162.2 268 42.5
FvH4_1g15102 Fragaria vesca HOM05D011771 ORTHO05D014214 1.8e-35 155.2 167 52.7
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 3.3e-34 151.0 104 73.1
FvH4_4g35091 Fragaria vesca HOM05D001017 ORTHO05D014214 3.3e-34 151.0 104 73.1
FvH4_1g18481 Fragaria vesca HOM05D011771 ORTHO05D014214 3.3e-26 124.4 94 68.1
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 2.6e-23 114.8 104 64.4
FvH4_4g00983 Fragaria vesca HOM05D011771 ORTHO05D022630 5.5e-21 107.1 142 50.0
RcHm_v2.0_Chr2g0105341 Rosa chinensis HOM05D000103 ORTHO05D000049 2.7e-20 104.8 281 31.7
RcHm_v2.0_Chr5g0081051 Rosa chinensis HOM05D005706 ORTHO05D016446 6.1e-20 103.6 108 55.6
RcHm_v2.0_Chr5g0075961 Rosa chinensis HOM05D001888 ORTHO05D001842 3.9e-19 100.9 110 47.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 6.7e-19 100.1 79 60.8
FvH4_7g04481 Fragaria vesca HOM05D020505 ORTHO05D198652 1.8e-16 92.0 111 49.5
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 1.0e-14 86.3 114 42.1
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.6e-12 79.0 129 41.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 2.1e-12 78.6 72 59.7
RcHm_v2.0_Chr4g0393191 Rosa chinensis HOM05D061369 ORTHO05D010829 2.1e-12 78.6 122 44.3
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 3.6e-12 77.8 72 59.7
RcHm_v2.0_Chr4g0437621 Rosa chinensis HOM05D001801 ORTHO05D001739 6.1e-12 77.0 111 43.2
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.4e-11 75.9 129 41.1
FvH4_2g18150 Fragaria vesca HOM05D000371 ORTHO05D001484 1.7e-09 68.9 92 48.9
RcHm_v2.0_Chr3g0479601 Rosa chinensis HOM05D011771 ORTHO05D012013 4.8e-09 67.4 62 53.2
FvH4_7g11680 Fragaria vesca HOM05D000371 ORTHO05D022630 1.4e-08 65.9 61 59.0
RcHm_v2.0_Chr6g0283541 Rosa chinensis HOM05D000371 ORTHO05D001484 1.8e-08 65.5 92 46.7
RcHm_v2.0_Chr4g0417791 Rosa chinensis HOM05D002024 ORTHO05D016446 3.1e-08 64.7 108 45.4
Sabra02G0189000 Salix brachista HOM05D000371 ORTHO05D001484 3.1e-08 64.7 77 49.4
TAR362G0793 Trochodendron aralioides HOM05D000371 ORTHO05D001484 3.1e-08 64.7 78 46.2
Potri.002G248300 Populus trichocarpa HOM05D000371 ORTHO05D001484 5.3e-08 63.9 77 49.4
RcHm_v2.0_Chr1g0363301 Rosa chinensis HOM05D000673 ORTHO05D037482 5.3e-08 63.9 63 55.6
TWI75G0156 Tripterygium wilfordii HOM05D000371 ORTHO05D001484 5.3e-08 63.9 92 42.4
BcaC06g30781 Brassica carinata HOM05D000371 ORTHO05D001484 7.0e-08 63.5 92 41.3
A06p39080 Brassica napus HOM05D000371 ORTHO05D001484 7.0e-08 63.5 92 41.3
BolC7t44446H Brassica oleracea HOM05D000371 ORTHO05D001484 7.0e-08 63.5 92 41.3
CARHR183440 Cardamine hirsuta HOM05D000371 ORTHO05D001484 7.0e-08 63.5 92 42.4
FvH4_1g23806 Fragaria vesca HOM05D011771 ORTHO05D014214 9.1e-08 63.2 47 61.7
FvH4_5g35040 Fragaria vesca HOM05D010234 ORTHO05D014636 9.1e-08 63.2 57 61.4
RcHm_v2.0_Chr4g0387101 Rosa chinensis HOM05D000109 ORTHO05D348560 9.1e-08 63.2 63 55.6
TWI36G0946 Tripterygium wilfordii HOM05D000371 ORTHO05D001484 9.1e-08 63.2 92 42.4
Actinidia09454 Actinidia chinensis HOM05D000371 ORTHO05D001484 1.2e-07 62.8 78 48.7
C07p39260 Brassica napus HOM05D000371 ORTHO05D001484 1.2e-07 62.8 92 40.2
BraA06t26822Z Brassica rapa HOM05D000371 ORTHO05D001484 1.2e-07 62.8 92 41.3
Cc01_g16410 Coffea canephora HOM05D000371 ORTHO05D001484 1.2e-07 62.8 78 46.2
DCAR_004749 Daucus carota HOM05D000371 ORTHO05D001484 1.2e-07 62.8 92 43.5
EL10Ac7g17958 Beta vulgaris HOM05D000371 ORTHO05D001484 1.6e-07 62.4 78 46.2
CAN.G874.19 Capsicum annuum HOM05D000371 ORTHO05D001484 1.6e-07 62.4 78 47.4
Peaxi162Scf01133g00014 Petunia axillaris HOM05D000371 ORTHO05D001484 1.6e-07 62.4 78 46.2
BcaC06g30780 Brassica carinata HOM05D000371 ORTHO05D001484 2.0e-07 62.0 92 40.2
Sp2g18930 Schrenkiella parvula HOM05D000371 ORTHO05D001484 2.0e-07 62.0 92 41.3
Medtr8g012340 Medicago truncatula HOM05D000371 ORTHO05D001484 2.6e-07 61.6 78 46.2
Psat4g204920 Pisum sativum HOM05D000371 ORTHO05D001484 2.6e-07 61.6 78 47.4
SalBow6G2280 Salvia bowleyana HOM05D000371 ORTHO05D001484 2.6e-07 61.6 78 46.2
TAR636G2828 Trochodendron aralioides HOM05D000371 ORTHO05D001484 2.6e-07 61.6 78 47.4
MELO3C021107.2 Cucumis melo HOM05D000371 ORTHO05D001484 3.5e-07 61.2 91 45.1
CsaV3_7G026570 Cucumis sativus L. HOM05D000371 ORTHO05D001484 3.5e-07 61.2 91 45.1
Glyma.03G086200 Glycine max HOM05D000371 ORTHO05D001484 3.5e-07 61.2 78 48.7
Glyma.16G088000 Glycine max HOM05D000371 ORTHO05D001484 3.5e-07 61.2 78 47.4
Hma1.2p1_0226F.1_g095160 Hydrangea macrophylla HOM05D000371 ORTHO05D001484 3.5e-07 61.2 78 46.2
Nn1g08125 Nelumbo nucifera HOM05D000371 ORTHO05D001484 3.5e-07 61.2 77 45.5
Cpa.g.sc8.107 Carica papaya HOM05D000371 ORTHO05D001484 4.5e-07 60.8 77 46.8
Ca_23206_v3 Cicer arietinum L. HOM05D000371 ORTHO05D001484 4.5e-07 60.8 78 46.2
Migut.D02482 Erythranthe guttata HOM05D000371 ORTHO05D001484 4.5e-07 60.8 78 44.9
HanXRQChr04g0108381 Helianthus annuus HOM05D000371 ORTHO05D001484 4.5e-07 60.8 78 46.2
Lsat_1_v5_gn_8_89001 Lactuca sativa HOM05D000371 ORTHO05D001484 4.5e-07 60.8 77 44.2
Lsat_1_v5_gn_9_17400 Lactuca sativa HOM05D000371 ORTHO05D001484 4.5e-07 60.8 79 44.3
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 4.5e-07 60.8 146 33.6
Actinidia23777 Actinidia chinensis HOM05D000371 ORTHO05D001484 5.9e-07 60.5 78 46.2
CANSAT64G1955 Cannabis sativa HOM05D000001 ORTHO05D000003 5.9e-07 60.5 132 31.1
Thhalv10003906m.g Eutrema salsugineum HOM05D000371 ORTHO05D001484 5.9e-07 60.5 92 39.1
FvH4_2g03860 Fragaria vesca HOM05D010234 ORTHO05D014636 5.9e-07 60.5 57 59.6
FvH4_3g11160 Fragaria vesca HOM05D000001 ORTHO05D000003 5.9e-07 60.5 132 30.3
Oeu019878.2 Olea europaea HOM05D000371 ORTHO05D001484 5.9e-07 60.5 90 42.2
QL09p049260 Quercus lobata HOM05D000371 ORTHO05D001484 5.9e-07 60.5 77 46.8
THA.LOC104808804 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 5.9e-07 60.5 92 41.3
Carub.0008s0820 Capsella rubella HOM05D000371 ORTHO05D001484 7.7e-07 60.1 92 40.2
Gohir.A11G140700 Gossypium hirsutum HOM05D000371 ORTHO05D001484 7.7e-07 60.1 77 46.8
Nitab4.5_0011877g0010 Nicotiana tabacum HOM05D000371 ORTHO05D001484 7.7e-07 60.1 78 44.9
Ah.08g218900 Amaranthus hybridus HOM05D000371 ORTHO05D001484 1.0e-06 59.7 78 46.2
CSS0033787 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D001484 1.0e-06 59.7 81 44.4
Duzib133G0343 Durio zibethinus HOM05D000371 ORTHO05D001484 1.0e-06 59.7 77 44.2
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.0e-06 59.7 51 58.8
Gorai.001G103400 Gossypium raimondii HOM05D000371 ORTHO05D001484 1.0e-06 59.7 77 44.2
Lj3g0022519 Lotus japonicus HOM05D000371 ORTHO05D001484 1.0e-06 59.7 78 46.2
RcHm_v2.0_Chr1g0366191 Rosa chinensis HOM05D000103 ORTHO05D000049 1.0e-06 59.7 111 37.8
AL8G21550 Arabidopsis lyrata HOM05D000371 ORTHO05D001484 1.3e-06 59.3 91 40.7
ClCG09G008490 Citrullus lanatus HOM05D000371 ORTHO05D001484 1.3e-06 59.3 91 44.0
Lalb_Chr19g0125951 Lupinus albus HOM05D000371 ORTHO05D001484 1.3e-06 59.3 78 46.2
Nitab4.5_0000296g0040 Nicotiana tabacum HOM05D000371 ORTHO05D001484 1.3e-06 59.3 78 44.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.3e-06 59.3 53 54.7
HPP92_003172 Vanilla planifolia HOM05D000371 ORTHO05D001484 1.3e-06 59.3 92 40.2
Atru.chr8.753 Acer truncatum HOM05D001801 ORTHO05D001739 1.7e-06 58.9 51 56.9
Aa31sc18G140 Aethionema arabicum HOM05D000371 ORTHO05D001484 1.7e-06 58.9 78 44.9
Migut.N00645 Erythranthe guttata HOM05D000371 ORTHO05D001484 1.7e-06 58.9 78 44.9
Nitab4.5_0006376g0040 Nicotiana tabacum HOM05D000371 ORTHO05D001484 1.7e-06 58.9 78 43.6
PSO017G3056 Papaver somniferum HOM05D000371 ORTHO05D001484 1.7e-06 58.9 92 42.4
PSO675G6938 Papaver somniferum HOM05D000371 ORTHO05D001484 1.7e-06 58.9 92 42.4
Psat3g150280 Pisum sativum HOM05D000371 ORTHO05D001484 1.7e-06 58.9 77 45.5
Prupe.3G242000 Prunus persica HOM05D001801 ORTHO05D001739 1.7e-06 58.9 51 56.9
RcHm_v2.0_Chr7g0204881 Rosa chinensis HOM05D000371 ORTHO05D001484 1.7e-06 58.9 56 57.1
TPR.G16458 Trifolium pratense HOM05D000371 ORTHO05D001484 1.7e-06 58.9 77 44.2
vmacro14711 Vaccinium macrocarpon HOM05D000371 ORTHO05D001484 1.7e-06 58.9 78 46.2
Zm00001eb036130 Zea mays HOM05D000371 ORTHO05D001484 1.7e-06 58.9 81 43.2
arahy.Tifrunner.gnm1.ann1.90AC01 Arachis hypogaea HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 43.6
arahy.Tifrunner.gnm1.ann1.S3X144 Arachis hypogaea HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 43.6
BcaC04g18927 Brassica carinata HOM05D001801 ORTHO05D001739 2.2e-06 58.5 45 55.6
C09p61190 Brassica napus HOM05D001801 ORTHO05D001739 2.2e-06 58.5 45 55.6
BolC9t58961H Brassica oleracea HOM05D001801 ORTHO05D001739 2.2e-06 58.5 45 55.6
Dinv30670 Davidia involucrata HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 44.9
Dinv34330 Davidia involucrata HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 44.9
Gohir.D07G096100 Gossypium hirsutum HOM05D000371 ORTHO05D001484 2.2e-06 58.5 77 44.2
Gorai.011G150600 Gossypium raimondii HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 44.9
HanXRQChr11g0344551 Helianthus annuus HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 43.6
MD10G1243200 Malus domestica HOM05D000001 ORTHO05D000003 2.2e-06 58.5 131 29.8
Manes.12G050700 Manihot esculenta HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 43.6
Rhsim01G0249900 Rhododendron simsii HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 46.2
SGA_v2.0_scaffold156G37298 Striga asiatica HOM05D000371 ORTHO05D001484 2.2e-06 58.5 78 43.6
GSVIVG01002527001 Vitis vinifera HOM05D000371 ORTHO05D001484 2.2e-06 58.5 77 44.2
GSVIVG01002899001 Vitis vinifera HOM05D000371 ORTHO05D001484 2.2e-06 58.5 77 44.2
MSTRG.18822 Avicennia marina HOM05D000371 ORTHO05D001484 2.9e-06 58.2 78 43.6
A03p44140 Brassica napus HOM05D000371 ORTHO05D001484 2.9e-06 58.2 92 41.3
CiPaw.13G051700 Carya illinoinensis HOM05D000371 ORTHO05D001484 2.9e-06 58.2 77 45.5
ECA236G2728 Erigeron canadensis HOM05D000371 ORTHO05D001484 2.9e-06 58.2 79 40.5
Thhalv10002468m.g Eutrema salsugineum HOM05D000371 ORTHO05D001484 2.9e-06 58.2 92 41.3
MD10G1156300 Malus domestica HOM05D000371 ORTHO05D001484 2.9e-06 58.2 78 46.2
Medtr8g038785 Medicago truncatula HOM05D000371 ORTHO05D001484 2.9e-06 58.2 52 59.6
Sp3g22860 Schrenkiella parvula HOM05D000371 ORTHO05D001484 2.9e-06 58.2 92 42.4
Sed0025920 Sechium edule HOM05D000371 ORTHO05D001484 2.9e-06 58.2 77 46.8
Aqoxy5G00042 Aquilegia oxysepala HOM05D000371 ORTHO05D001484 3.8e-06 57.8 81 43.2
Haze_03331 Corylus avellana HOM05D000371 ORTHO05D001484 3.8e-06 57.8 77 44.2
Duzib133G0789 Durio zibethinus HOM05D001801 ORTHO05D001739 3.8e-06 57.8 44 61.4
Duzib138G0609 Durio zibethinus HOM05D001801 ORTHO05D001739 3.8e-06 57.8 44 61.4
MBI11_g07397_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D001484 3.8e-06 57.8 70 45.7
MD05G1166200 Malus domestica HOM05D000371 ORTHO05D001484 3.8e-06 57.8 78 44.9
Medtr8g010620 Medicago truncatula HOM05D000371 ORTHO05D001484 3.8e-06 57.8 78 43.6
Medtr8g011560 Medicago truncatula HOM05D000371 ORTHO05D019255 3.8e-06 57.8 75 45.3
Prupe.4G100900 Prunus persica HOM05D000001 ORTHO05D000003 3.8e-06 57.8 49 57.1
RcHm_v2.0_Chr2g0163531 Rosa chinensis HOM05D001801 ORTHO05D001739 3.8e-06 57.8 47 59.6
Sed0010939 Sechium edule HOM05D000371 ORTHO05D001484 3.8e-06 57.8 77 46.8
Sc17g0001910 Simmondsia chinensis HOM05D000371 ORTHO05D001484 3.8e-06 57.8 78 46.2
PGSC0003DMG400020107 Solanum tuberosum HOM05D000371 ORTHO05D001484 3.8e-06 57.8 78 44.9
Actinidia23376 Actinidia chinensis HOM05D000371 ORTHO05D001484 5.0e-06 57.4 78 44.9
arahy.Tifrunner.gnm1.ann1.3FW66N Arachis hypogaea HOM05D000371 ORTHO05D001484 5.0e-06 57.4 77 45.5
Ciclev10031088m.g Citrus clementina HOM05D000371 ORTHO05D001484 5.0e-06 57.4 78 43.6
FvH4_6g45580 Fragaria vesca HOM05D001801 ORTHO05D001739 5.0e-06 57.4 53 50.9
Glyma.08G346700 Glycine max HOM05D000371 ORTHO05D001484 5.0e-06 57.4 77 44.2
Gohir.D11G147200 Gossypium hirsutum HOM05D000371 ORTHO05D001484 5.0e-06 57.4 77 45.5
Os08g0525600 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 5.0e-06 57.4 92 39.1
Solyc02g089720.3 Solanum lycopersicum HOM05D001801 ORTHO05D001739 5.0e-06 57.4 53 52.8
Sopen02g034440 Solanum pennellii HOM05D001801 ORTHO05D001739 5.0e-06 57.4 53 52.8
Sopen06g034580 Solanum pennellii HOM05D000371 ORTHO05D001484 5.0e-06 57.4 78 44.9
THA.LOC104818983 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 5.0e-06 57.4 92 39.1
TPR.G9670 Trifolium pratense HOM05D001801 ORTHO05D001739 5.0e-06 57.4 79 43.0
TWI15G0229 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 5.0e-06 57.4 135 30.4
AT5G48570 Arabidopsis thaliana HOM05D000371 ORTHO05D001484 6.5e-06 57.0 77 42.9
EL10Ac9g22652 Beta vulgaris HOM05D000001 ORTHO05D000003 6.5e-06 57.0 163 27.6
BraA03t13544Z Brassica rapa HOM05D000371 ORTHO05D001484 6.5e-06 57.0 92 40.2
Ca_14087_v3 Cicer arietinum L. HOM05D001801 ORTHO05D001739 6.5e-06 57.0 84 41.7
Ciclev10011145m.g Citrus clementina HOM05D001801 ORTHO05D001739 6.5e-06 57.0 45 57.8
Duzib211G0643 Durio zibethinus HOM05D000371 ORTHO05D001484 6.5e-06 57.0 77 44.2
Gohir.A10G130600 Gossypium hirsutum HOM05D000371 ORTHO05D001484 6.5e-06 57.0 78 43.6
HanXRQChr08g0232301 Helianthus annuus HOM05D000371 ORTHO05D001484 6.5e-06 57.0 79 40.5
MD09G1081400 Malus domestica HOM05D001801 ORTHO05D001739 6.5e-06 57.0 49 55.1
Psat7g076200 Pisum sativum HOM05D000371 ORTHO05D001484 6.5e-06 57.0 78 44.9
Solyc06g083190.4 Solanum lycopersicum HOM05D000371 ORTHO05D001484 6.5e-06 57.0 78 44.9
CDE04G3404 Ceratophyllum demersum HOM05D000371 ORTHO05D001484 8.5e-06 56.6 91 41.8
COL.COLO4_04273 Corchorus olitorius HOM05D001801 ORTHO05D001739 8.5e-06 56.6 42 61.9
Gohir.D10G135800 Gossypium hirsutum HOM05D000371 ORTHO05D001484 8.5e-06 56.6 78 43.6
Prupe.8G194100 Prunus persica HOM05D000371 ORTHO05D001484 8.5e-06 56.6 78 43.6
Rhsim13G0115900 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.5e-06 56.6 132 29.5
THA.LOC104822478 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 8.5e-06 56.6 92 39.1


User provided reference genes

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