Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.2e-50 203.0 107 100.0
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-21 105.9 104 60.6
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.4e-16 89.0 48 91.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 7.6e-10 67.4 113 41.6
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.6e-10 67.4 113 41.6
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.6e-10 67.4 113 41.6
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 6.5e-09 64.3 113 38.9
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.5e-08 62.4 47 70.2
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.6e-07 59.7 47 61.7
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.6e-07 59.7 47 61.7
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 2.1e-07 59.3 41 68.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 2.1e-07 59.3 41 68.3
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.7e-07 58.9 109 36.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.7e-07 58.9 41 68.3
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.5e-07 58.5 41 65.9
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 4.6e-07 58.2 41 68.3
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.6e-07 58.2 41 68.3
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 6.0e-07 57.8 41 65.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 6.0e-07 57.8 41 65.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 6.0e-07 57.8 41 68.3
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 7.9e-07 57.4 41 68.3
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 7.9e-07 57.4 41 68.3
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 7.9e-07 57.4 108 35.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.3e-06 56.6 41 68.3
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.3e-06 56.6 41 63.4
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.3e-06 56.6 41 63.4
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.3e-06 56.6 41 63.4
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.3e-06 56.6 41 63.4
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.8e-06 56.2 41 63.4
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.8e-06 56.2 41 65.9
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.8e-06 56.2 41 61.0
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.8e-06 56.2 41 65.9
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.8e-06 56.2 41 65.9
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.8e-06 56.2 47 57.4
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.3e-06 55.8 41 68.3
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.3e-06 55.8 41 63.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.3e-06 55.8 112 33.9
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 3.0e-06 55.5 41 63.4
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 3.9e-06 55.1 48 56.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.9e-06 55.1 41 63.4
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.9e-06 55.1 41 63.4
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.9e-06 55.1 38 65.8
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.1e-06 54.7 41 65.9
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 5.1e-06 54.7 41 63.4
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.1e-06 54.7 41 63.4
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.1e-06 54.7 41 63.4
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 5.1e-06 54.7 41 63.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 6.7e-06 54.3 41 61.0
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 6.7e-06 54.3 41 61.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 6.7e-06 54.3 41 61.0
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 6.7e-06 54.3 39 61.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 6.7e-06 54.3 41 61.0
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.7e-06 54.3 113 34.5
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 6.7e-06 54.3 41 65.9
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 63.4
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 8.7e-06 53.9 38 65.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 61.0
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 63.4
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 63.4
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 61.0
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 63.4
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 8.7e-06 53.9 41 63.4


User provided reference genes

Program Settings