Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 7.3e-104 380.6 191 100.0
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 7.3e-104 380.6 191 100.0
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.8e-103 378.6 191 99.5
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.6e-103 378.3 191 99.0
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.6e-103 378.3 191 99.5
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 1.2e-101 373.2 191 97.4
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 1.1e-91 340.1 191 89.0
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.1e-87 325.9 192 85.4
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 1.4e-86 323.2 196 84.7
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.4e-86 323.2 200 82.0
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.7e-84 316.2 195 81.0
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 2.9e-84 315.5 195 81.0
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 1.1e-83 313.5 195 80.0
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 3.2e-83 312.0 196 82.7
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 9.2e-83 310.5 193 81.3
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 1.2e-82 310.1 198 80.8
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 3.5e-82 308.5 194 79.9
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 6.0e-82 307.8 198 80.8
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 7.8e-82 307.4 193 81.3
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 1.0e-81 307.0 200 77.5
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 6.6e-81 304.3 192 81.8
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 6.6e-81 304.3 192 81.8
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 8.6e-81 303.9 197 78.2
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 1.5e-80 303.1 199 80.4
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.5e-80 302.4 201 78.6
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.3e-80 301.6 196 78.1
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 5.6e-80 301.2 199 79.9
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 5.6e-80 301.2 192 81.2
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.2e-79 300.1 196 80.6
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 1.2e-79 300.1 199 78.4
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.6e-79 299.7 191 79.6
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 3.6e-79 298.5 195 78.5
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 4.7e-79 298.1 195 77.9
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 8.1e-79 297.4 191 79.1
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.4e-78 296.6 199 78.4
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 1.8e-78 296.2 190 80.5
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.0e-78 295.0 195 79.0
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 4.0e-78 295.0 191 80.6
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.0e-78 295.0 201 76.1
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 4.0e-78 295.0 195 76.9
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 5.2e-78 294.7 191 79.1
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 6.9e-78 294.3 199 76.4
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 6.9e-78 294.3 195 79.5
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 6.9e-78 294.3 195 79.5
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 8.9e-78 293.9 190 79.5
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 1.5e-77 293.1 203 75.9
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 2.0e-77 292.7 191 80.1
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.0e-77 292.7 195 76.4
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 4.4e-77 291.6 195 75.9
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 7.6e-77 290.8 192 76.0
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.7e-76 289.7 197 76.1
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 2.2e-76 289.3 187 80.7
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 4.9e-76 288.1 192 75.5
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 4.9e-76 288.1 192 75.5
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 6.4e-76 287.7 182 80.2
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 6.4e-76 287.7 204 76.0
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 8.4e-76 287.3 199 78.4
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 1.1e-75 287.0 195 78.5
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.4e-75 286.6 198 77.8
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.4e-75 286.6 198 77.8
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.4e-75 286.6 198 77.8
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 4.2e-75 285.0 192 76.6
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 9.3e-75 283.9 193 77.2
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 4.6e-74 281.6 195 76.4
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 6.0e-74 281.2 194 74.2
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.7e-73 279.6 191 77.0
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 6.6e-73 277.7 171 81.3
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.1e-71 272.7 191 72.8
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.4e-70 270.0 205 70.2
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 6.9e-70 267.7 191 73.3
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 2.0e-69 266.2 206 71.4
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 4.9e-68 261.5 180 75.0
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 6.4e-68 261.2 198 69.7
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 8.4e-68 260.8 190 72.1
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 2.4e-67 259.2 201 69.7
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 2.4e-67 259.2 201 69.7
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 2.4e-67 259.2 201 69.7
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 2.4e-67 259.2 201 69.7
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 3.2e-67 258.8 205 68.3
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 4.2e-67 258.5 181 70.7
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 5.4e-67 258.1 198 68.7
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 7.1e-67 257.7 177 74.6
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 9.3e-67 257.3 198 70.2
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 4.6e-66 255.0 198 68.2
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 6.0e-66 254.6 202 67.8
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 7.9e-66 254.2 198 70.2
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.0e-65 253.8 186 70.4
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.0e-65 253.8 186 70.4
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 3.0e-65 252.3 204 67.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 3.0e-65 252.3 204 67.6
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 3.0e-65 252.3 202 67.8
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 4.3e-64 248.4 204 66.2
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 5.3e-62 241.5 187 66.3
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 4.5e-61 238.4 164 75.0
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.1e-59 233.8 182 67.0
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 3.2e-59 232.3 169 71.0
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.0e-57 227.3 174 71.3
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.8e-57 226.5 158 72.8
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 9.3e-51 204.1 197 60.9
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 7.4e-48 194.5 179 54.2
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.5e-45 186.8 144 68.8
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 5.5e-43 178.3 191 48.2
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.8e-41 173.3 110 80.0
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.0e-41 172.6 110 80.0
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 6.7e-41 171.4 177 48.6
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.7e-40 168.3 182 53.3
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 3.7e-39 165.6 181 49.2
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 1.4e-35 153.7 103 74.8
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.1e-32 144.1 180 49.4
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.3e-28 130.6 119 55.5
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 2.6e-24 116.3 131 49.6
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 9.4e-19 97.8 62 75.8
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.3e-12 77.4 68 61.8
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 2.9e-12 76.3 48 72.9
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 1.5e-11 73.9 56 75.0
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.4e-06 55.5 33 72.7


User provided reference genes

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