Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 6385.1 3231 100.0
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6345.4 3231 99.4
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6273.0 3231 98.3
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6237.1 3231 97.7
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 6217.5 3232 97.3
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 5844.6 3234 92.0
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 5096.2 3249 80.6
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 4873.9 3253 77.6
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4400.5 3257 70.2
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4389.3 3254 70.2
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4216.4 3291 67.4
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4189.4 3259 67.3
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4185.9 3271 67.1
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4137.0 3257 66.3
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4127.0 3269 66.1
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4122.4 3257 66.3
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 4089.3 3253 66.2
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4049.2 3257 65.2
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4041.9 3270 65.1
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4031.1 3272 64.9
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 4001.8 3319 63.9
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3983.3 3285 64.2
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3974.9 3253 64.1
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3956.4 3258 64.3
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3948.7 3262 63.9
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3930.6 3260 63.5
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3921.7 3259 63.8
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3920.2 3255 64.0
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3892.4 3269 62.9
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3883.6 3269 62.7
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3855.1 3259 62.8
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3852.4 3246 63.1
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3833.9 3257 62.4
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3831.6 3251 62.9
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3762.6 3379 60.6
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3758.8 2884 68.0
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3745.7 3264 60.4
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3742.6 3298 60.7
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3721.4 3270 60.2
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3689.8 3265 59.8
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3681.3 3269 60.4
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3670.9 3273 59.9
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3662.8 3270 61.0
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3565.4 3313 58.3
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3551.1 3292 58.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3536.1 3288 58.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3524.6 3292 58.2
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3517.2 3270 58.5
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3510.3 3259 58.4
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3503.4 3266 58.0
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3499.5 3274 58.1
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3479.1 3264 57.9
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3461.8 3258 57.4
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3457.9 3261 57.4
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3455.2 3257 57.2
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3454.1 3263 57.4
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3449.1 3016 61.1
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3441.7 3330 56.6
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3430.2 3258 57.4
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3424.0 3269 57.7
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3422.9 3268 57.3
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3413.6 3276 57.3
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3406.7 3264 57.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3400.9 3251 57.4
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3386.3 3142 58.0
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3386.3 3269 56.8
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3341.2 3282 56.2
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3305.0 3272 55.2
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3280.0 3266 55.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3269.2 3293 54.7
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3225.6 3247 54.9
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3131.3 2700 61.5
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3044.6 2436 65.4
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2984.1 2020 75.8
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2954.1 3105 53.6
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2928.3 3019 54.6
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2759.9 3130 51.2
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2667.9 3274 47.3
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2528.1 2468 55.5
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2360.5 1601 76.8
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2284.6 2572 51.4
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2237.6 2006 59.8
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2232.6 1690 68.7
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2175.2 3372 40.7
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2069.7 2423 48.5
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2045.0 1507 71.0
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2023.4 2449 47.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2020.0 1796 61.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2010.3 1468 71.1
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2003.8 2830 43.1
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1937.9 1450 71.7
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1936.0 3301 38.1
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1915.2 3318 38.0
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1835.1 3555 36.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1644.8 1004 83.7
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1528.1 1238 63.5
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1514.6 2182 42.7
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1477.2 1746 48.1
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1374.0 970 72.4
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1364.7 1499 51.1
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1303.5 1546 48.3
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1255.0 1017 65.3
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1246.9 1553 47.7
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1211.4 843 73.4
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1160.6 1505 44.5
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1147.9 835 71.4
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1076.2 1137 55.9
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.4e-302 1043.5 852 63.8
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.4e-302 1043.5 974 59.2
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 9.5e-297 1025.4 890 59.9
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 6.2e-296 1022.7 3367 27.7
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.5e-273 947.6 751 64.2
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 5.1e-258 896.7 1308 41.7
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 9.7e-225 786.2 815 52.3
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.3e-205 721.8 815 48.8
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.9e-205 721.5 441 81.2
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 9.5e-204 716.5 411 88.6
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 5.8e-185 654.1 864 44.8
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.5e-177 629.4 937 41.7
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.4e-159 569.7 819 43.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 2.9e-152 545.4 411 68.6
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.8e-144 518.5 656 45.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 9.6e-140 503.8 461 56.6
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 5.1e-133 481.5 806 38.2
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.3e-132 478.8 327 72.5
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.9e-127 463.0 823 36.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.6e-126 459.9 270 82.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.5e-124 452.6 250 88.4
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.9e-117 428.7 921 34.3
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 6.7e-117 427.9 613 44.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 4.4e-116 425.2 301 72.8
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 7.4e-116 424.5 578 46.9
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.6e-110 406.8 416 54.6
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 8.5e-104 384.4 343 62.7
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 6.3e-99 368.2 217 86.6
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.5e-97 362.5 528 40.3
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 1.9e-95 356.7 251 66.9
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.8e-93 350.1 825 31.3
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 3.0e-93 349.4 244 68.9
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-91 343.2 356 52.8
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.0e-85 324.3 644 32.6
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.7e-80 307.0 311 54.3
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.0e-77 296.2 958 27.1
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 2.4e-74 286.6 804 29.5
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 3.0e-72 279.6 298 52.0
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 5.0e-72 278.9 326 48.8
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 8.1e-62 245.0 155 78.1
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-60 240.7 335 43.0
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.3e-59 237.7 711 27.3
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 6.8e-53 215.3 731 28.2
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 6.8e-53 215.3 395 36.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 1.8e-45 190.7 194 53.6
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 6.9e-37 162.2 118 70.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 8.7e-32 145.2 82 85.4
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 4.3e-31 142.9 142 55.6
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.2e-28 134.8 97 72.2
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.8e-27 129.8 113 52.2
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.3e-24 121.3 86 69.8
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 3.0e-24 120.2 114 60.5
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 3.9e-24 119.8 91 71.4
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.9e-24 119.8 111 62.2
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 3.1e-21 110.2 70 78.6
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 6.9e-21 109.0 107 59.8
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.9e-18 100.9 103 47.6
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.0e-16 95.1 60 68.3
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 4.8e-14 86.3 145 35.2
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.4e-10 74.7 56 67.9
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 1.2e-09 71.6 92 48.9
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 3.6e-09 70.1 76 47.4
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 6.1e-09 69.3 107 40.2
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 1.0e-08 68.6 98 45.9
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.0e-08 68.6 45 75.6


User provided reference genes

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