Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 2.4e-168 595.5 324 100.0
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.2e-152 541.6 299 98.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 2.1e-151 539.3 299 95.7
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.4e-147 526.6 302 96.4
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 6.5e-145 517.7 293 96.2
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.3e-142 509.2 293 92.5
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.6e-140 503.1 281 98.9
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.5e-136 488.0 281 96.8
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.1e-125 453.8 293 81.9
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.7e-124 449.9 300 80.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 2.2e-124 449.5 293 80.9
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.1e-123 447.2 293 80.9
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.4e-123 446.8 300 79.3
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 3.1e-123 445.7 299 79.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 3.1e-123 445.7 299 79.6
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 4.1e-123 445.3 298 79.5
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 9.1e-123 444.1 300 78.7
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.5e-122 443.4 293 81.2
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.3e-121 440.3 289 80.6
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.7e-121 439.9 289 81.3
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 3.8e-121 438.7 293 82.3
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 5.0e-121 438.3 292 82.2
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-120 437.2 298 78.9
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 6.1e-119 431.4 297 77.1
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.0e-118 430.6 297 76.8
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 3.9e-118 428.7 299 76.6
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.9e-118 428.7 294 76.5
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.2e-118 428.3 294 76.5
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.5e-117 426.8 297 76.4
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.4e-117 425.2 294 76.2
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 4.4e-117 425.2 289 78.5
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 5.7e-117 424.9 289 79.2
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 7.4e-117 424.5 289 79.2
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.2e-116 422.9 293 77.8
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 8.2e-116 421.0 289 78.5
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.1e-115 420.6 293 78.2
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.1e-115 420.6 289 78.5
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.4e-115 420.2 309 73.5
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-115 420.2 293 76.8
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 4.1e-115 418.7 306 74.5
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 7.0e-115 417.9 297 75.1
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 9.1e-115 417.5 289 77.2
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 9.1e-115 417.5 289 77.5
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.6e-114 416.0 290 77.9
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 4.5e-114 415.2 290 77.6
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 4.5e-114 415.2 289 74.7
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 5.9e-114 414.8 290 80.3
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.7e-113 413.3 304 74.3
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.9e-113 412.5 293 77.1
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 3.8e-113 412.1 300 73.7
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.5e-113 411.4 293 76.5
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.5e-113 411.0 295 75.9
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.5e-113 411.0 295 75.9
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 8.5e-113 411.0 289 76.5
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.1e-112 410.6 298 73.5
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.5e-112 410.2 290 76.9
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.5e-112 409.5 304 74.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.5e-112 409.5 297 72.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.2e-112 409.1 289 77.9
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.2e-112 409.1 293 74.4
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.2e-112 409.1 293 74.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 4.2e-112 408.7 304 72.4
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 9.4e-112 407.5 293 74.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.2e-111 407.1 289 78.9
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.2e-111 407.1 293 74.1
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.6e-111 406.8 290 77.9
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.6e-111 406.8 290 77.9
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.1e-111 406.4 289 77.9
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 2.7e-111 406.0 290 75.5
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.7e-111 406.0 300 73.3
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.4e-110 403.7 297 71.4
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 3.0e-110 402.5 290 77.2
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 3.0e-110 402.5 293 72.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 6.8e-110 401.4 296 73.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 8.8e-110 401.0 304 71.1
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.5e-109 400.2 298 72.5
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.5e-109 400.2 297 71.4
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.5e-109 400.2 297 71.4
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.0e-109 399.8 304 70.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 3.4e-109 399.1 290 77.9
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.4e-109 399.1 300 71.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 7.5e-109 397.9 297 71.0
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.7e-108 395.6 290 76.6
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 1.4e-107 393.7 291 74.6
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 5.3e-107 391.7 293 73.0
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 7.0e-107 391.3 289 71.6
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 7.0e-107 391.3 305 70.8
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 4.5e-106 388.7 281 75.1
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 4.5e-106 388.7 289 71.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 7.7e-106 387.9 281 73.3
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.2e-104 382.5 289 71.6
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.6e-103 380.2 294 70.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.6e-103 380.2 289 70.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 7.5e-101 371.3 289 68.5
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 2.2e-100 369.8 290 66.9
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.4e-99 366.3 289 67.5
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.4e-99 366.3 202 97.5
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.2e-98 364.0 292 67.8
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 3.5e-98 362.5 289 67.5
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 3.5e-98 362.5 294 66.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 4.5e-98 362.1 298 67.1
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.3e-97 360.5 304 63.2
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.1e-96 357.5 302 61.9
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 4.0e-94 349.0 281 66.5
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 2.2e-92 343.2 297 60.9
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.0e-89 334.3 273 67.4
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 8.0e-87 324.7 270 65.9
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 6.8e-78 295.0 221 74.2
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.0e-73 281.2 291 58.1
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.1e-72 277.7 195 77.4
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.9e-72 276.9 301 53.5
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.1e-64 251.1 159 85.5
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 9.6e-64 248.1 172 75.0
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 6.2e-63 245.4 291 52.2
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.1e-62 243.0 292 50.0
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.7e-60 237.3 195 68.2
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.1e-56 224.6 194 60.3
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 8.1e-55 218.4 337 43.3
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.8e-50 201.8 139 77.7
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.0e-49 201.4 292 45.9
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 5.3e-46 189.1 137 71.5
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-43 179.9 98 98.0
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.7e-42 176.8 229 52.8
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 2.6e-37 160.2 186 54.3
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 4.5e-37 159.5 115 77.4
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.9e-36 156.8 204 49.0
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 3.9e-33 146.4 96 80.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.3e-32 143.3 169 50.3
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.7e-31 139.8 91 78.0
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 3.8e-28 129.8 183 39.9
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.6e-18 96.3 86 64.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.8e-17 94.4 281 29.9
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 7.4e-16 89.0 303 30.0
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.7e-15 86.7 71 74.6
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-14 85.1 57 71.9
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 5.3e-14 82.8 43 86.0
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 1.0e-12 78.6 39 87.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 5.0e-12 76.3 149 38.9
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.2e-10 71.6 172 31.4
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-06 58.5 57 54.4


User provided reference genes

Program Settings