Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 1.6e-74 282.7 152 100.0
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.8e-73 279.3 152 98.7
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 3.8e-71 271.6 152 96.7
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 7.1e-70 267.3 152 95.4
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 1.0e-60 236.9 152 86.2
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 1.7e-34 149.8 151 59.6
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 6.3e-34 147.9 162 58.0
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 3.0e-28 129.0 157 49.7
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 2.4e-25 119.4 158 47.5
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 1.2e-24 117.1 173 49.1
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 1.1e-22 110.5 159 44.7
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 1.1e-22 110.5 152 42.8
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.6e-21 106.7 148 52.0
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 3.6e-21 105.5 170 42.4
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 4.7e-21 105.1 152 46.1
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 8.0e-21 104.4 148 51.4
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 3.0e-20 102.4 144 46.5
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 6.8e-20 101.3 152 40.8
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 1.2e-19 100.5 167 46.1
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 3.4e-19 99.0 162 46.9
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 3.4e-19 99.0 162 46.9
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 4.4e-19 98.6 149 47.7
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 9.8e-19 97.4 155 44.5
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 4.9e-18 95.1 167 44.3
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 4.9e-18 95.1 162 43.8
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 6.3e-18 94.7 164 42.1
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 8.3e-18 94.4 155 43.9
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 1.8e-17 93.2 156 45.5
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 1.8e-17 93.2 141 45.4
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 2.4e-17 92.8 162 35.8
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 7.0e-17 91.3 156 42.9
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 2.7e-16 89.4 166 36.1
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 3.5e-16 89.0 170 43.5
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 4.5e-16 88.6 157 40.1
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 1.0e-15 87.4 158 37.3
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 2.3e-15 86.3 161 36.6
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 2.3e-15 86.3 157 44.6
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 2.9e-15 85.9 160 42.5
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 1.1e-14 84.0 162 34.6
Lalb_Chr07g0184821 Lupinus albus HOM05D007384 ORTHO05D008511 1.1e-14 84.0 162 43.8
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 2.5e-14 82.8 163 37.4
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 3.3e-14 82.4 161 35.4
arahy.Tifrunner.gnm1.ann1.AK8RBW Arachis hypogaea HOM05D007384 ORTHO05D008511 5.6e-14 81.6 166 45.2
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 8.0e-13 77.8 161 39.8
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 1.8e-12 76.6 149 34.2
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 2.3e-12 76.3 171 36.3
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 4.0e-12 75.5 152 40.1
Phvul.009G139900 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 8.9e-12 74.3 169 42.0
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 8.9e-12 74.3 170 38.2
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 1.2e-11 73.9 156 34.6
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 1.2e-11 73.9 159 39.6
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 1.2e-11 73.9 156 34.0
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 1.5e-11 73.6 160 35.0
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 1.5e-11 73.6 166 34.9
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 3.4e-11 72.4 161 35.4
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 3.4e-11 72.4 153 34.0
Psat5g065520 Pisum sativum HOM05D007384 ORTHO05D008511 4.4e-11 72.0 168 39.3
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 9.8e-11 70.9 148 35.8
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 9.8e-11 70.9 162 34.0
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 9.8e-11 70.9 149 34.2
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 9.8e-11 70.9 151 33.8
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 9.8e-11 70.9 171 32.7
TAR520G0001 Trochodendron aralioides HOM05D007384 ORTHO05D008511 1.7e-10 70.1 170 30.0
Duzib147G1655 Durio zibethinus HOM05D007384 ORTHO05D008511 8.3e-10 67.8 113 44.2
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 1.4e-09 67.0 147 31.3
arahy.Tifrunner.gnm1.ann1.XNBA0B Arachis hypogaea HOM05D007384 ORTHO05D008511 1.8e-09 66.6 72 58.3
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 2.4e-09 66.2 160 28.8
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 3.2e-09 65.9 162 31.5
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 3.2e-09 65.9 156 32.7
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 3.2e-09 65.9 170 29.4
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 4.1e-09 65.5 160 28.8
Cfa002748 Carpinus fangiana HOM05D007384 ORTHO05D008511 7.0e-09 64.7 176 33.5
VMungo1309G0400 Vigna mungo HOM05D007384 ORTHO05D008511 7.0e-09 64.7 168 39.9
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 9.2e-09 64.3 155 34.2
Glyma.06G146100 Glycine max HOM05D007384 ORTHO05D008511 5.9e-08 61.6 163 30.1
Glyma.04G219700 Glycine max HOM05D007384 ORTHO05D008511 7.8e-08 61.2 93 40.9
Sabra07G0068500 Salix brachista HOM05D007384 ORTHO05D008511 1.3e-07 60.5 115 37.4
Gohir.A02G134800 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.7e-07 60.1 122 37.7
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 2.3e-07 59.7 164 36.0
Gohir.D10G101900 Gossypium hirsutum HOM05D007384 ORTHO05D008511 3.0e-07 59.3 70 52.9
Nn5g28918 Nelumbo nucifera HOM05D007384 ORTHO05D008511 5.0e-07 58.5 166 30.1
Nitab4.5_0000471g0140 Nicotiana tabacum HOM05D007384 ORTHO05D008511 6.6e-07 58.2 156 33.3
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 1.5e-06 57.0 152 32.9
EL10Ac6g14748 Beta vulgaris HOM05D007384 ORTHO05D008511 5.6e-06 55.1 154 29.9
BcaB02g09838 Brassica carinata HOM05D012887 ORTHO05D008511 7.3e-06 54.7 108 38.9
BolC3t18390H Brassica oleracea HOM05D012887 ORTHO05D008511 7.3e-06 54.7 152 30.9
Eucgr.I00328 Eucalyptus grandis HOM05D007384 ORTHO05D008511 9.5e-06 54.3 163 34.4
Hma1.2p1_0375F.1_g138660 Hydrangea macrophylla HOM05D007384 ORTHO05D008511 9.5e-06 54.3 49 51.0
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 9.5e-06 54.3 147 34.0


User provided reference genes

Program Settings