Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 5.0e-166 587.8 318 100.0
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 7.2e-165 583.9 318 99.4
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 9.4e-165 583.6 318 99.4
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.5e-157 557.8 318 95.6
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 4.4e-130 468.4 318 81.1
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 3.2e-104 382.5 347 64.8
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 7.9e-87 324.7 332 61.4
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 1.6e-84 317.0 326 59.5
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 2.1e-84 316.6 328 59.5
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.1e-83 314.3 316 59.2
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.7e-81 307.0 325 59.4
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 4.9e-81 305.4 323 58.2
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 1.1e-80 304.3 319 59.2
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.9e-80 303.5 319 58.0
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 2.5e-80 303.1 319 58.3
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 5.5e-80 302.0 335 56.1
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.5e-79 299.3 314 56.4
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.0e-79 298.5 314 57.6
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 3.0e-78 296.2 322 57.1
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 5.1e-78 295.4 319 57.1
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.1e-77 294.3 321 57.3
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.1e-77 294.3 323 56.3
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.5e-77 293.9 322 56.8
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 2.5e-77 293.1 314 57.6
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 7.4e-77 291.6 324 56.5
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.3e-76 290.8 314 57.0
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.8e-76 289.7 326 55.8
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 8.2e-76 288.1 317 56.5
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.1e-75 287.7 319 57.4
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.4e-75 287.3 329 56.2
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.4e-75 287.3 317 58.0
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.8e-75 287.0 316 54.7
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 5.3e-75 285.4 316 55.7
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 6.9e-75 285.0 318 53.5
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.6e-74 283.1 315 54.6
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.6e-74 283.1 315 54.6
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.4e-74 282.7 321 55.8
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.2e-73 280.0 323 56.0
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 2.2e-73 280.0 314 53.8
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 2.9e-73 279.6 314 52.5
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 8.5e-73 278.1 321 53.6
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 1.1e-72 277.7 317 53.3
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.1e-72 277.7 326 55.2
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 1.4e-72 277.3 313 55.9
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 3.2e-72 276.2 316 52.8
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 4.2e-72 275.8 323 54.8
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 7.2e-72 275.0 314 52.9
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 9.4e-72 274.6 315 54.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 9.4e-72 274.6 315 56.2
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.2e-71 274.2 320 53.8
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.6e-71 273.9 320 54.1
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.6e-71 273.9 324 53.7
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 2.7e-71 273.1 314 55.1
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 3.6e-71 272.7 318 51.9
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 6.1e-71 271.9 320 53.4
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 7.9e-71 271.6 353 48.7
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 7.9e-71 271.6 314 53.2
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 3.0e-70 269.6 311 53.4
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 3.9e-70 269.2 319 53.0
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 8.8e-70 268.1 312 54.5
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.0e-69 266.9 325 53.5
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 2.5e-69 266.5 316 52.8
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 7.4e-69 265.0 304 55.3
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 9.7e-69 264.6 315 54.0
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 4.8e-68 262.3 200 69.0
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 8.2e-68 261.5 314 53.2
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.4e-67 260.8 358 46.1
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.4e-67 260.0 323 51.4
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 5.3e-67 258.8 316 52.8
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 7.7e-66 255.0 316 52.5
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.0e-65 254.6 324 51.2
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.0e-65 254.6 319 52.0
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 5.0e-65 252.3 323 51.1
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 1.4e-64 250.8 314 50.3
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 1.4e-64 250.8 311 51.1
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.2e-64 249.6 322 50.3
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 4.2e-64 249.2 314 49.0
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 4.2e-64 249.2 314 49.0
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 1.6e-63 247.3 313 49.5
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 2.1e-63 246.9 285 56.1
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 2.7e-63 246.5 317 52.1
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 3.6e-63 246.1 325 50.8
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.8e-62 243.8 289 55.7
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 6.7e-62 241.9 325 48.6
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 6.7e-62 241.9 321 48.0
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-61 241.1 265 58.1
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 2.0e-61 240.4 196 66.8
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 2.0e-61 240.4 338 48.2
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.6e-61 240.0 264 56.1
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 3.3e-61 239.6 337 47.8
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 4.4e-61 239.2 320 48.1
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.7e-60 237.3 321 49.2
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-59 234.6 324 50.3
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.4e-59 233.4 196 65.3
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.4e-59 233.4 196 65.3
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 2.4e-59 233.4 317 48.6
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 3.1e-59 233.0 316 47.8
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 7.0e-59 231.9 314 50.0
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 7.7e-58 228.4 317 48.6
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 1.0e-57 228.0 311 48.6
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 8.5e-57 224.9 323 47.7
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 5.5e-56 222.2 312 46.8
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 3.6e-55 219.5 315 47.3
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 3.6e-55 219.5 315 47.3
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 3.9e-54 216.1 265 52.5
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.5e-53 214.2 316 48.4
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.2e-49 200.3 312 45.2
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.8e-49 199.5 104 98.1
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 5.5e-48 195.7 314 43.0
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 9.4e-48 194.9 212 54.2
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 4.7e-47 192.6 321 41.7
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.8e-46 190.7 214 52.3
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 2.3e-46 190.3 274 46.0
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.6e-45 186.8 197 54.3
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 7.5e-45 185.3 262 48.5
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 9.7e-45 184.9 171 61.4
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 6.3e-44 182.2 230 48.7
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.2e-41 173.7 247 50.2
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 7.2e-40 168.7 339 39.8
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 2.1e-39 167.2 262 45.0
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.5e-37 161.0 197 52.3
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 2.0e-37 160.6 249 45.8
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 7.5e-37 158.7 338 36.4
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 1.3e-36 157.9 121 71.9
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 3.7e-36 156.4 265 44.2
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.8e-35 154.1 168 55.4
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.3e-33 147.9 312 36.5
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.9e-33 146.7 328 37.5
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 2.9e-33 146.7 97 79.4
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 2.9e-33 146.7 322 37.9
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 9.5e-32 141.7 106 66.0
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.8e-31 140.2 312 36.2
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.7e-31 139.4 288 39.2
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.4e-30 137.9 223 45.7
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.0e-30 136.3 215 47.9
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 5.2e-30 136.0 205 42.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 8.9e-30 135.2 98 68.4
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.4e-29 133.3 215 46.5
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 7.0e-27 125.6 319 37.6
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 7.0e-27 125.6 228 42.1
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.3e-25 121.3 340 34.4
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.9e-20 102.8 95 55.8
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 5.4e-19 99.4 93 54.8
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 3.5e-18 96.7 149 47.0
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 3.9e-17 93.2 82 63.4
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 8.0e-15 85.5 57 75.4
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 6.8e-14 82.4 93 49.5
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.0e-13 80.9 71 64.8
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.1e-08 65.1 217 31.8
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 1.2e-07 61.6 139 36.7
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 3.6e-07 60.1 53 62.3
arahy.Tifrunner.gnm1.ann1.1A1X10 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.4e-06 58.2 44 59.1
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 5.2e-06 56.2 158 33.5


User provided reference genes

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