Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 2.2e-290 1001.9 625 100.0
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.0e-284 981.5 651 95.4
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.5e-283 979.2 635 93.7
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.9e-266 921.8 637 92.5
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.6e-264 916.0 635 92.6
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.7e-255 885.9 617 92.2
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.6e-227 792.3 627 73.7
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 7.8e-163 578.2 639 60.1
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 3.9e-154 549.3 633 58.5
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 8.1e-136 488.4 650 54.9
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 2.9e-125 453.4 652 51.2
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.8e-125 453.0 652 48.9
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 2.3e-122 443.7 456 57.0
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 3.0e-122 443.4 463 57.9
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 4.3e-121 439.5 644 46.7
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.7e-120 436.4 657 47.6
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.2e-118 431.4 651 47.9
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 5.5e-116 422.5 648 46.5
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 9.3e-116 421.8 676 45.0
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 4.6e-115 419.5 660 45.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 5.1e-114 416.0 635 48.3
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 1.5e-113 414.5 674 47.5
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 9.6e-113 411.8 656 44.5
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.8e-112 410.2 673 45.6
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.8e-112 410.2 500 51.4
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.7e-112 409.8 665 43.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 2.4e-111 407.1 663 43.6
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 4.0e-111 406.4 661 44.6
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.9e-111 405.6 684 42.7
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 9.0e-111 405.2 338 67.2
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 9.0e-111 405.2 694 42.2
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.2e-110 404.8 683 43.3
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 7.6e-110 402.1 658 44.2
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.0e-109 401.7 568 47.2
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.3e-109 401.4 662 43.2
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.7e-109 401.0 569 47.1
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.2e-109 400.6 685 44.7
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 3.8e-109 399.8 392 61.5
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 1.1e-108 398.3 383 60.1
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.2e-108 396.7 652 43.7
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 5.5e-108 396.0 505 50.3
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 5.5e-108 396.0 664 42.2
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.5e-108 396.0 569 46.6
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 7.1e-108 395.6 659 44.2
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 7.1e-108 395.6 657 47.0
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.2e-107 394.8 447 54.6
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.2e-107 394.8 647 45.6
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.6e-107 394.4 443 52.6
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.6e-107 394.4 652 46.5
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 4.6e-107 392.9 336 63.4
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 7.9e-107 392.1 656 43.3
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.3e-106 391.3 653 43.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.3e-106 390.6 542 48.5
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.0e-106 390.2 340 65.6
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 5.1e-106 389.4 649 49.5
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.1e-105 388.3 652 42.9
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.9e-105 387.5 653 44.9
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.9e-105 387.5 661 44.5
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 3.3e-105 386.7 673 42.9
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.6e-104 384.4 671 42.8
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.2e-104 384.0 659 44.0
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 2.2e-104 384.0 576 45.8
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 3.7e-104 383.3 659 43.9
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 8.2e-104 382.1 689 41.7
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.1e-103 381.7 585 45.5
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.8e-103 380.9 658 42.1
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 1.2e-102 378.3 659 41.7
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.5e-102 377.9 677 43.0
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.6e-102 377.1 711 43.3
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 4.5e-102 376.3 673 43.7
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 4.5e-102 376.3 667 45.3
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 7.7e-102 375.6 654 45.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 7.7e-102 375.6 665 42.4
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 6.5e-101 372.5 660 47.1
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.9e-100 370.9 670 42.7
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.6e-99 367.9 587 44.0
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.4e-98 364.8 663 41.2
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 1.4e-98 364.8 649 45.1
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.4e-98 364.8 547 46.1
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 2.3e-98 364.0 585 44.8
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 5.1e-98 362.8 661 43.3
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 5.7e-97 359.4 671 42.9
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.1e-95 355.1 652 42.8
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 5.3e-95 352.8 592 43.6
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.3e-95 352.8 386 53.9
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 4.5e-94 349.7 743 38.2
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.1e-91 340.9 543 44.9
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 4.7e-91 339.7 534 44.4
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 6.1e-91 339.3 694 41.9
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.1e-87 328.6 628 40.1
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.4e-87 327.4 528 44.3
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 5.9e-86 322.8 413 47.9
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 5.9e-86 322.8 368 52.2
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.0e-85 322.0 651 42.2
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.3e-85 321.6 660 39.8
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 6.5e-85 319.3 575 43.0
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.0e-81 307.8 643 42.6
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 3.2e-76 290.4 565 39.5
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.8e-74 284.6 647 37.6
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 6.7e-74 282.7 632 40.8
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.6e-73 280.8 427 42.9
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 7.2e-68 262.7 439 41.5
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.5e-60 238.4 532 39.1
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 5.7e-57 226.5 218 58.3
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 7.5e-49 199.5 233 51.1
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.1e-47 195.7 460 36.7
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.5e-44 185.3 528 36.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 5.6e-44 183.3 125 72.0
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 1.1e-42 179.1 193 53.4
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 5.2e-42 176.8 225 50.2
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.6e-41 174.5 481 31.6
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.1e-39 169.1 554 30.7
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.4e-39 167.9 318 40.6
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 3.2e-39 167.5 112 73.2
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 1.3e-37 162.2 118 66.9
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 2.3e-37 161.4 111 73.9
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 3.0e-37 161.0 118 66.9
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 5.6e-36 156.8 112 73.2
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 8.1e-35 152.9 538 27.9
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 4.4e-33 147.1 113 68.1
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.3e-29 135.6 534 27.3
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 3.9e-29 134.0 88 76.1
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 7.3e-28 129.8 230 37.4
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 3.6e-27 127.5 90 71.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.1e-26 125.9 240 39.6
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.4e-26 125.6 93 72.0
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.9e-24 117.9 110 49.1
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 7.8e-22 109.8 201 42.3
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 1.6e-19 102.1 246 28.9
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 4.2e-15 87.4 81 59.3
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 2.3e-13 81.6 141 40.4
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 6.6e-13 80.1 141 43.3
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.5e-12 79.0 140 42.1
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 4.8e-11 73.9 249 33.7
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 5.3e-10 70.5 454 28.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 3.8e-08 64.3 75 50.7
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.2e-07 61.2 45 64.4
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.2e-06 59.3 74 51.4


User provided reference genes

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