Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 6.8e-204 713.8 357 100.0
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-193 679.9 357 96.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.0e-191 671.8 357 95.5
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-190 669.8 356 94.9
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.6e-184 649.4 333 97.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.9e-177 625.9 360 88.6
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.3e-106 390.6 379 60.7
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.5e-102 377.1 379 58.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-100 370.9 379 57.0
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.9e-73 280.4 374 47.6
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.0e-66 258.1 379 48.5
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.8e-63 247.3 372 44.6
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.0e-62 243.8 381 44.6
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 8.3e-61 238.4 378 41.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 3.5e-59 233.0 378 41.8
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 5.1e-58 229.2 376 42.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.1e-57 228.0 380 42.6
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.9e-57 227.3 375 42.1
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.9e-57 227.3 361 44.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.1e-55 221.5 376 41.8
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 3.1e-55 219.9 387 40.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.0e-55 219.5 379 44.1
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.4e-54 216.5 334 45.8
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.9e-54 214.9 361 41.8
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.9e-53 213.4 378 40.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.4e-52 210.3 376 39.6
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.1e-52 209.5 361 41.3
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 4.1e-52 209.5 367 43.1
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.1e-52 208.8 370 41.9
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.6e-51 207.6 376 42.0
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.6e-51 206.1 362 40.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.6e-51 206.1 362 40.3
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.0e-51 205.7 379 39.6
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.6e-48 196.4 376 40.2
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 8.1e-48 195.3 362 37.8
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.9e-47 192.2 364 38.5
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.5e-46 191.0 369 39.3
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 6.4e-45 185.7 345 39.1
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 8.4e-45 185.3 391 38.9
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.9e-44 184.1 280 44.3
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.4e-44 183.7 371 38.0
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.4e-44 182.6 392 38.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.6e-43 181.0 366 36.9
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.1e-43 180.6 176 55.7
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 6.0e-43 179.1 359 37.6
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.3e-42 177.2 333 40.2
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.1e-41 174.9 404 34.7
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 7.3e-41 172.2 231 47.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.6e-40 169.9 361 34.6
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.8e-40 169.5 365 33.4
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-39 168.3 371 36.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.4e-39 167.9 357 33.1
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.0e-38 164.1 333 40.5
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 4.5e-38 162.9 385 36.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.8e-38 162.5 366 36.6
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.2e-37 160.6 355 35.8
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-37 160.6 355 35.8
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.2e-37 160.6 355 35.8
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 6.4e-37 159.1 366 34.7
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.9e-36 157.5 348 35.1
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 7.1e-36 155.6 354 33.6
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 9.3e-36 155.2 356 34.6
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.6e-35 154.5 342 33.9
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 7.9e-35 152.1 344 32.6
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 8.7e-34 148.7 349 33.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 1.1e-33 148.3 346 36.1
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.1e-33 148.3 354 33.6
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.3e-33 146.4 353 33.7
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 5.6e-33 146.0 364 34.6
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.8e-31 141.0 356 34.0
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.1e-31 140.2 385 33.8
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.0e-31 139.8 178 46.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.9e-31 139.0 391 33.8
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.4e-30 136.7 357 33.1
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 3.4e-30 136.7 359 33.4
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 9.9e-30 135.2 142 52.1
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 9.9e-30 135.2 142 52.1
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-29 134.8 229 39.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-29 134.8 229 39.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.9e-29 133.7 334 35.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.8e-29 133.3 355 33.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.8e-29 133.3 353 32.6
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 6.4e-29 132.5 354 32.2
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 8.4e-29 132.1 364 31.0
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 8.4e-29 132.1 352 33.5
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.9e-28 131.0 352 33.2
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.9e-28 131.0 322 32.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.4e-28 130.6 170 42.9
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.4e-28 130.6 360 33.1
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.2e-28 130.2 279 35.5
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 7.1e-28 129.0 378 31.7
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 9.3e-28 128.6 359 31.2
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 9.3e-28 128.6 371 31.0
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-27 127.5 133 49.6
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 2.1e-27 127.5 373 30.8
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 6.0e-27 125.9 372 31.2
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.3e-26 124.0 345 30.4
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 2.3e-26 124.0 135 49.6
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 3.9e-26 123.2 360 31.1
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 6.7e-26 122.5 148 46.6
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.5e-25 121.3 360 32.5
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.9e-25 120.9 345 30.4
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 2.8e-24 117.1 135 47.4
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 5.3e-23 112.8 360 29.2
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 5.3e-23 112.8 126 43.7
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.5e-22 111.3 370 29.5
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.6e-22 110.5 159 41.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 3.4e-22 110.2 339 34.5
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 4.5e-22 109.8 367 30.5
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 5.8e-22 109.4 360 30.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.6e-22 109.0 358 32.4
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.0e-21 108.6 352 27.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.9e-21 107.1 373 28.7
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.5e-20 104.0 432 26.9
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 4.2e-20 103.2 347 31.1
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 7.1e-20 102.4 145 39.3
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 7.1e-20 102.4 341 30.8
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 9.3e-20 102.1 332 30.4
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 9.3e-20 102.1 383 29.2
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 9.3e-20 102.1 383 29.2
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 9.3e-20 102.1 307 31.9
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.1e-19 100.9 350 30.9
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 6.0e-19 99.4 280 33.2
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 6.0e-19 99.4 358 26.5
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 7.9e-19 99.0 248 31.5
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.2e-16 90.9 340 30.6
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.8e-16 90.5 109 47.7
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 7.2e-12 75.9 88 47.7
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 9.3e-12 75.5 178 33.1
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-11 74.3 88 42.0
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 3.9e-10 70.1 110 36.4
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 6.7e-10 69.3 129 32.6
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 8.8e-10 68.9 181 31.5
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.5e-09 68.2 291 28.9
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 2.8e-08 63.9 129 29.5
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.7e-08 63.5 105 37.1
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 4.8e-08 63.2 348 24.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 8.2e-08 62.4 278 28.8
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.1e-07 60.1 79 44.3
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 3.4e-06 57.0 43 58.1


User provided reference genes

Program Settings