Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 4.6e-109 397.9 201 100.0
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.9e-88 327.8 167 99.4
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-86 323.6 167 98.2
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.2e-86 321.6 167 97.6
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.3e-74 281.2 167 88.0
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.2e-72 276.9 169 85.2
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 6.1e-61 238.0 168 74.4
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 7.5e-59 231.1 168 72.0
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 4.9e-58 228.4 174 69.0
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.7e-55 219.9 174 67.8
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 3.3e-54 215.7 178 66.9
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.6e-54 214.9 181 62.4
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 5.6e-54 214.9 173 65.9
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.6e-53 213.4 167 68.3
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.1e-53 213.0 174 67.2
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.1e-53 213.0 174 67.2
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.1e-53 213.0 177 63.8
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 4.7e-53 211.8 170 66.5
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 8.0e-53 211.1 175 64.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.4e-52 210.3 186 62.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.4e-52 210.3 177 63.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.4e-52 210.3 182 62.6
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 4.0e-52 208.8 208 56.7
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.9e-52 207.6 177 63.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.2e-51 207.2 174 66.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.5e-51 206.8 170 64.7
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.0e-51 206.5 173 64.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.0e-51 206.5 177 63.3
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.6e-51 206.1 173 64.2
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.6e-51 206.1 175 64.6
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.6e-51 206.1 187 62.0
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 3.4e-51 205.7 178 65.2
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 4.4e-51 205.3 171 64.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 5.8e-51 204.9 191 61.8
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 7.5e-51 204.5 173 66.5
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 7.5e-51 204.5 142 74.6
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 9.8e-51 204.1 179 64.8
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.7e-50 203.4 167 64.7
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.7e-50 203.4 175 62.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.9e-50 202.6 179 63.7
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 3.7e-50 202.2 179 62.6
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.7e-50 202.2 168 63.7
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 4.9e-50 201.8 186 60.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 4.9e-50 201.8 186 60.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.9e-50 201.8 176 63.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 6.4e-50 201.4 200 59.0
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 6.4e-50 201.4 182 63.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.4e-49 200.3 179 62.6
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.9e-49 199.9 179 63.1
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.9e-49 199.9 184 62.0
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.4e-49 199.5 176 63.6
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.4e-49 199.5 135 75.6
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.4e-49 199.5 148 72.3
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 4.1e-49 198.7 180 62.2
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 5.4e-49 198.4 181 60.2
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.4e-49 198.4 165 62.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 7.0e-49 198.0 183 62.8
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 7.0e-49 198.0 176 62.5
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.2e-49 197.6 179 63.7
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.2e-48 197.2 186 58.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-48 197.2 172 64.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.2e-48 197.2 178 61.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.2e-48 197.2 168 62.5
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-48 196.8 179 63.1
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.7e-48 196.1 182 60.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.7e-48 196.1 194 57.7
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.7e-48 196.1 165 62.4
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.7e-48 196.1 176 62.5
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 3.5e-48 195.7 180 59.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.5e-48 195.7 177 61.6
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 4.6e-48 195.3 177 61.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.0e-48 194.9 178 61.8
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.0e-47 194.1 180 61.1
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-47 194.1 169 61.5
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.3e-47 193.7 180 60.6
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.0e-47 192.6 181 60.2
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.0e-47 192.6 181 60.2
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.0e-47 192.6 181 60.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.9e-47 192.2 187 58.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 5.0e-47 191.8 186 58.1
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 6.6e-47 191.4 180 59.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 6.6e-47 191.4 137 70.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 8.6e-47 191.0 177 61.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 8.6e-47 191.0 177 61.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 8.6e-47 191.0 171 63.7
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 8.6e-47 191.0 171 63.7
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.5e-46 190.3 171 63.7
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.9e-46 189.9 134 70.9
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 2.5e-46 189.5 168 58.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.5e-46 189.5 170 59.4
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.3e-46 189.1 174 61.5
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 5.6e-46 188.3 190 55.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 9.5e-46 187.6 179 58.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.1e-45 186.4 180 59.4
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.1e-45 186.4 179 57.0
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.1e-45 186.4 179 57.0
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.1e-45 186.4 172 61.0
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 3.6e-45 185.7 138 69.6
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 4.7e-45 185.3 155 67.1
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 6.2e-45 184.9 192 54.7
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.8e-44 183.3 176 58.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 4.0e-44 182.2 189 56.6
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 6.8e-44 181.4 166 56.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-43 180.6 165 60.6
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.6e-43 179.5 194 53.6
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 4.4e-43 178.7 181 56.4
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 3.7e-42 175.6 190 54.2
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 6.4e-42 174.9 167 58.7
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 8.3e-42 174.5 153 61.4
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.4e-41 172.9 170 58.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 4.1e-41 172.2 191 52.4
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.4e-41 171.8 171 56.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.1e-40 169.9 109 73.4
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 5.6e-38 161.8 170 56.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.6e-37 160.2 188 49.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 2.1e-37 159.8 188 48.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.3e-34 150.6 88 83.0
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 6.4e-34 148.3 134 56.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.6e-32 142.1 123 60.2
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.1e-30 137.5 140 58.6
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.6e-30 135.2 144 56.2
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.3e-30 134.8 138 58.7
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 3.1e-28 129.4 103 62.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 3.4e-27 125.9 101 62.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 7.6e-27 124.8 101 61.4
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.3e-26 124.0 109 62.4
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.7e-26 123.6 102 61.8
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.9e-26 122.9 105 61.9
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.9e-25 120.2 84 69.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.2e-25 119.4 103 58.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.2e-25 119.4 109 55.0
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.5e-24 115.9 101 55.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.0e-23 114.4 102 56.9
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.2e-21 107.5 108 49.1
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.1e-21 104.8 165 42.4
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 8.1e-21 104.8 123 52.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-20 104.0 109 52.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.0e-20 102.4 102 50.0
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.9e-20 101.7 101 53.5
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 9.0e-20 101.3 93 55.9
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.4e-19 99.0 91 51.6
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.7e-18 97.1 99 51.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.9e-18 96.3 99 57.6
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-17 94.4 69 65.2
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 9.3e-17 91.3 64 73.4
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 3.5e-16 89.4 120 49.2
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.6e-16 89.0 67 68.7
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 2.3e-15 86.7 96 42.7
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 5.1e-15 85.5 126 39.7
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 5.6e-14 82.0 95 47.4
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.6e-13 80.5 89 49.4
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.3e-10 70.9 131 33.6


User provided reference genes

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