Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 3.4e-184 648.3 347 100.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 7.1e-174 614.0 349 93.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.9e-158 562.8 351 84.6
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.6e-141 505.4 318 87.4
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 3.7e-138 495.4 355 73.5
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 3.2e-134 482.3 347 73.8
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 1.8e-121 439.9 358 65.9
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.6e-117 426.8 341 66.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 8.8e-116 421.0 344 66.3
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 2.8e-114 416.0 328 67.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 2.8e-114 416.0 328 67.1
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.4e-113 412.9 332 65.7
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 5.3e-113 411.8 355 62.8
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 5.5e-110 401.7 344 64.0
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 7.2e-110 401.4 344 64.0
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 1.2e-109 400.6 339 66.4
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 8.0e-109 397.9 329 64.7
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.8e-108 396.7 344 62.8
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 2.0e-107 393.3 336 61.3
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 6.3e-106 388.3 342 61.4
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 6.3e-106 388.3 342 60.2
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 8.3e-106 387.9 339 60.5
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.1e-105 387.5 354 59.3
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-105 387.1 351 59.0
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-105 387.1 351 59.0
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-105 387.1 351 59.0
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.4e-105 387.1 351 59.0
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 7.0e-105 384.8 367 57.8
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 9.1e-105 384.4 345 60.0
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.6e-104 383.6 334 66.5
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 4.5e-104 382.1 334 62.0
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 4.5e-104 382.1 335 61.8
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.0e-103 380.9 351 57.3
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 1.0e-103 380.9 355 57.2
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 2.9e-103 379.4 361 57.9
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 2.9e-103 379.4 350 59.4
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.1e-102 377.5 348 58.3
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.3e-102 375.9 356 58.1
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 7.2e-102 374.8 337 59.6
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 9.5e-102 374.4 349 59.6
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.2e-101 374.0 349 55.9
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.2e-101 374.0 352 55.7
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 2.1e-101 373.2 355 58.3
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 3.6e-101 372.5 360 55.6
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 3.6e-101 372.5 334 59.3
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 6.1e-101 371.7 355 55.5
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 6.1e-101 371.7 338 58.6
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.8e-100 370.2 331 58.6
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.8e-100 370.2 352 54.5
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.8e-100 370.2 336 58.6
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 3.0e-100 369.4 350 55.4
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 4.0e-100 369.0 355 56.3
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 6.8e-100 368.2 346 57.8
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.5e-99 367.1 355 57.2
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 2.0e-99 366.7 353 56.1
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.3e-98 364.0 342 54.1
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 2.2e-98 363.2 350 57.4
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 3.7e-98 362.5 360 55.8
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 8.3e-98 361.3 335 58.5
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 8.3e-98 361.3 331 60.7
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.1e-97 360.9 334 59.0
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.4e-97 360.5 356 55.9
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.4e-97 360.5 347 58.8
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 2.4e-97 359.8 337 57.9
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 2.4e-97 359.8 356 56.2
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 5.4e-97 358.6 333 59.5
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.6e-96 357.1 354 60.2
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 5.9e-96 355.1 351 56.4
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.3e-95 354.0 351 56.1
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.7e-95 353.6 356 55.3
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 2.9e-95 352.8 349 55.0
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.1e-94 350.9 347 55.3
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.9e-94 350.1 351 54.7
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 4.3e-94 349.0 333 57.7
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.1e-93 346.7 345 55.1
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 2.1e-93 346.7 330 53.6
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 6.1e-93 345.1 333 55.9
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.8e-92 343.6 381 54.1
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 3.7e-90 335.9 340 53.2
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.7e-90 335.9 333 54.4
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 6.4e-90 335.1 340 55.0
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 8.3e-90 334.7 341 54.5
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 1.4e-89 334.0 352 53.7
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.1e-89 332.4 343 51.9
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 5.4e-89 332.0 334 56.0
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.2e-88 330.9 349 52.1
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 3.5e-88 329.3 353 50.4
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 4.6e-88 328.9 343 51.6
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 3.0e-87 326.2 338 52.1
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 8.6e-87 324.7 372 50.8
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 8.6e-87 324.7 372 50.8
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.9e-86 323.6 339 54.3
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 1.7e-82 310.5 322 54.0
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 8.3e-82 308.1 313 53.4
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 5.1e-79 298.9 348 45.4
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 8.1e-77 291.6 346 50.3
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.3e-76 290.0 360 47.5
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.1e-72 276.9 334 46.4
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 4.6e-72 275.8 298 53.0
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.7e-71 273.9 135 96.3
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.3e-66 257.7 173 71.7
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 4.9e-66 255.8 206 62.1
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 6.0e-64 248.8 336 44.3
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 8.7e-63 245.0 162 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 1.5e-62 244.2 342 41.5
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 8.1e-61 238.4 320 41.9
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 1.8e-60 237.3 339 42.5
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 3.8e-58 229.6 324 44.8
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.6e-56 224.2 245 54.7
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 4.6e-56 222.6 129 80.6
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 7.3e-54 215.3 364 36.5
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.4e-52 211.1 353 40.8
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 2.9e-50 203.4 173 54.9
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-48 198.0 305 43.0
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 2.6e-43 180.3 350 34.0
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 5.5e-41 172.6 317 39.1
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 9.3e-41 171.8 306 40.5
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 2.3e-39 167.2 204 49.0
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 5.3e-36 156.0 258 43.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.5e-35 154.5 332 31.3
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.7e-32 143.7 147 57.1
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 6.9e-28 129.0 143 44.8
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 3.4e-27 126.7 163 49.7
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.4e-27 126.7 86 68.6
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.5e-22 111.3 77 70.1
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 9.7e-22 108.6 87 57.5
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.5e-19 101.3 140 45.0
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 7.7e-19 99.0 90 60.0
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 7.2e-17 92.4 60 70.0
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.6e-16 91.3 132 33.3
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 2.0e-11 74.3 96 52.1
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 2.5e-09 67.4 118 40.7
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.1e-08 64.3 58 56.9
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 2.3e-07 60.8 110 28.2
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 8.8e-07 58.9 163 23.3


User provided reference genes

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