Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.6e-137 493.0 301 100.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-136 490.0 283 99.6
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.5e-135 485.7 283 95.1
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-134 483.4 308 96.8
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 2.2e-102 376.3 282 77.3
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 9.8e-79 297.7 287 63.8
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.4e-69 267.3 228 69.3
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.5e-63 247.3 219 66.7
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 5.8e-63 245.4 218 66.1
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 5.8e-63 245.4 218 66.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.2e-61 239.6 206 69.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 4.6e-60 235.7 212 66.0
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 8.6e-59 231.5 293 55.3
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.9e-58 230.3 221 65.6
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.5e-58 229.9 207 67.6
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 3.3e-58 229.6 220 65.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 3.3e-58 229.6 209 67.5
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.1e-57 226.9 288 55.6
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 8.0e-57 224.9 215 64.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.8e-56 223.8 219 61.2
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.8e-56 223.8 219 63.5
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.8e-56 223.8 203 64.5
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.3e-56 223.4 220 63.2
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 4.0e-56 222.6 207 65.7
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 4.4e-55 219.2 278 52.2
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.8e-55 218.8 219 59.8
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 7.5e-55 218.4 220 63.2
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 9.8e-55 218.0 219 62.6
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 9.8e-55 218.0 291 54.0
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.3e-54 217.6 218 62.4
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.9e-53 213.8 221 60.2
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 3.2e-53 213.0 268 53.7
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 3.2e-53 213.0 215 60.5
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.4e-53 212.2 282 53.9
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 2.7e-52 209.9 220 61.4
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.5e-52 209.5 226 57.5
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.5e-52 209.5 272 53.3
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 4.6e-52 209.1 260 56.2
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.3e-51 207.6 288 51.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 3.0e-51 206.5 219 61.6
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 5.1e-51 205.7 186 65.1
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 8.6e-51 204.9 289 51.9
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.9e-50 203.8 207 60.9
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.3e-50 203.0 215 59.1
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 5.6e-50 202.2 213 60.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 9.5e-50 201.4 203 61.6
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.1e-49 200.3 256 54.7
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 3.6e-49 199.5 165 70.9
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.7e-49 199.1 221 57.5
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 6.2e-49 198.7 218 58.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 8.1e-49 198.4 168 69.6
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.1e-48 198.0 266 52.3
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.8e-48 197.2 194 62.4
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.3e-48 196.8 278 50.7
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.0e-48 196.1 216 58.8
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.2e-48 195.7 189 65.6
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 8.9e-48 194.9 214 57.9
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 2.0e-47 193.7 264 50.4
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 2.0e-47 193.7 218 57.3
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.0e-47 193.7 230 54.8
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 2.6e-47 193.4 211 56.9
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 2.6e-47 193.4 228 55.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 3.4e-47 193.0 194 60.8
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.4e-47 193.0 233 53.6
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 5.8e-47 192.2 221 57.0
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.5e-47 191.8 266 51.5
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 7.5e-47 191.8 283 49.5
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 9.9e-47 191.4 222 58.6
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.7e-46 190.7 221 56.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.9e-46 189.9 228 55.3
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 3.7e-46 189.5 242 52.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 3.7e-46 189.5 210 55.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 6.4e-46 188.7 196 58.7
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 6.4e-46 188.7 230 56.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 6.4e-46 188.7 214 58.9
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.4e-46 188.7 216 53.7
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 8.3e-46 188.3 209 55.0
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.4e-45 187.6 209 54.5
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.4e-45 187.6 221 53.8
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.9e-45 187.2 196 58.2
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.9e-45 187.2 192 60.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.9e-45 187.2 222 56.3
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.4e-45 186.8 281 49.8
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 3.2e-45 186.4 209 54.1
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.2e-45 186.4 210 57.6
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 4.1e-45 186.0 211 53.1
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 4.1e-45 186.0 211 53.1
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 4.1e-45 186.0 219 56.2
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 5.4e-45 185.7 215 56.3
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.1e-45 185.3 273 48.0
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 6.0e-44 182.2 304 43.1
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 1.7e-43 180.6 152 69.7
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 3.9e-43 179.5 221 54.8
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.9e-43 179.5 293 45.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-42 177.9 248 49.6
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.5e-42 177.6 248 49.6
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-42 177.6 281 42.7
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.9e-42 177.2 225 54.7
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.5e-42 176.8 222 51.8
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.3e-42 176.0 203 57.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 5.6e-42 175.6 225 54.2
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 5.6e-42 175.6 219 51.1
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 7.3e-42 175.3 212 54.2
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 9.5e-42 174.9 212 54.7
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 9.5e-42 174.9 249 49.4
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.2e-41 174.5 221 52.0
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 8.1e-41 171.8 222 55.9
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.4e-40 170.2 162 61.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 3.4e-39 166.4 246 48.4
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 4.4e-39 166.0 189 55.0
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.9e-37 160.6 224 48.7
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 3.2e-37 159.8 283 43.1
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 4.2e-37 159.5 214 47.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 3.5e-36 156.4 110 78.2
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 3.5e-36 156.4 180 55.0
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.3e-35 154.5 148 63.5
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 1.7e-35 154.1 115 73.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.3e-35 153.7 135 65.9
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.0e-35 153.3 254 47.6
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 8.7e-35 151.8 190 51.6
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.6e-33 147.5 134 64.9
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 2.1e-33 147.1 199 48.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 3.6e-33 146.4 140 65.0
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.1e-32 144.8 182 51.6
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.8e-32 144.1 141 61.0
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.1e-32 143.3 116 72.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.0e-31 140.6 131 66.4
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 8.4e-30 135.2 178 49.4
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.9e-29 134.0 141 58.2
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 6.0e-28 129.0 88 81.8
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.1e-25 118.6 118 59.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 9.0e-24 115.2 136 54.4
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 9.0e-24 115.2 131 56.5
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.2e-22 110.5 102 59.8
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.5e-18 97.8 101 58.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 5.6e-18 95.9 155 43.9
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 3.7e-17 93.2 161 39.8
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.8e-16 90.9 130 44.6
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 6.9e-16 89.0 88 62.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.5e-15 87.8 105 45.7
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-14 84.3 61 75.4
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 2.9e-14 83.6 150 39.3
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.9e-14 83.6 116 50.9
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.4e-14 82.0 165 44.2
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.5e-13 80.5 82 54.9
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.1e-09 67.4 46 78.3
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.8e-09 66.2 49 75.5
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.3e-08 62.8 106 45.3


User provided reference genes

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