Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 2.7e-81 305.4 175 100.0
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 3.9e-80 301.6 175 93.7
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.3e-79 298.1 175 92.6
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 5.3e-77 291.2 170 91.8
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.2e-76 290.0 170 88.8
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 8.8e-72 273.9 179 79.3
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 4.7e-17 92.0 174 43.1
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 1.2e-15 87.4 173 40.5
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 9.9e-15 84.3 166 41.6
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.4e-13 80.5 174 34.5
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 9.2e-13 77.8 177 36.7
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 1.3e-11 73.9 175 39.4
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 3.0e-11 72.8 164 36.6
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 8.6e-11 71.2 171 36.8
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 8.6e-11 71.2 159 35.2
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 1.1e-10 70.9 176 36.9
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 3.3e-10 69.3 166 38.0
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 5.6e-10 68.6 159 36.5
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 5.6e-10 68.6 173 36.4
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 9.6e-10 67.8 159 36.5
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 1.2e-09 67.4 171 42.7
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.2e-09 67.4 172 41.9
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 2.1e-09 66.6 154 35.7
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.1e-09 66.6 172 34.9
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 6.2e-09 65.1 171 31.6
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 6.2e-09 65.1 162 38.3
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 6.2e-09 65.1 156 36.5
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.4e-08 63.9 180 40.0
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 1.4e-08 63.9 158 33.5
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.4e-08 63.9 184 39.1
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 1.4e-08 63.9 184 38.0
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.8e-08 63.5 172 33.1
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.8e-08 63.5 172 38.4
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 1.8e-08 63.5 167 35.9
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 2.4e-08 63.2 172 42.4
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 2.4e-08 63.2 168 33.9
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.4e-08 63.2 183 38.3
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 2.4e-08 63.2 159 36.5
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 3.1e-08 62.8 185 35.1
Prupe.6G193200 Prunus persica HOM05D013332 ORTHO05D004477 5.2e-08 62.0 201 40.3
EL10As13g24057 Beta vulgaris HOM05D031888 ORTHO05D004477 2.6e-07 59.7 185 35.7
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 3.4e-07 59.3 165 31.5
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 3.4e-07 59.3 176 31.2
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 4.4e-07 58.9 174 39.1
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.4e-07 58.9 159 33.3
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 7.6e-07 58.2 172 30.8
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 7.6e-07 58.2 174 33.9
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 9.9e-07 57.8 169 33.7
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 9.9e-07 57.8 173 32.4
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 1.3e-06 57.4 170 34.7
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.3e-06 57.4 152 34.9
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.3e-06 57.4 162 40.1
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.7e-06 57.0 188 38.8
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 2.9e-06 56.2 178 32.0
Nitab4.5_0003888g0010 Nicotiana tabacum HOM05D013332 ORTHO05D004477 3.8e-06 55.8 84 40.5
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 4.9e-06 55.5 168 29.2
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 6.4e-06 55.1 181 30.4


User provided reference genes

Program Settings