Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 1.1e-139 500.0 263 100.0
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.6e-136 487.3 258 99.2
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.1e-134 480.7 263 96.2
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 8.4e-119 430.6 237 93.2
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 2.5e-118 429.1 262 85.5
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 1.3e-98 363.6 244 81.1
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 1.1e-94 350.5 253 73.1
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 1.1e-94 350.5 253 73.1
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 2.5e-94 349.4 237 75.1
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 7.2e-94 347.8 222 79.7
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 2.1e-93 346.3 269 72.5
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 4.7e-93 345.1 248 71.8
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 2.3e-92 342.8 227 76.7
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 6.7e-92 341.3 237 74.7
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 8.8e-92 340.9 228 75.4
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 1.1e-91 340.5 228 74.6
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 2.0e-91 339.7 239 74.5
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 3.3e-91 339.0 197 85.8
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 4.4e-91 338.6 201 81.1
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 9.7e-91 337.4 196 85.2
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.2e-90 336.3 201 80.6
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 3.7e-90 335.5 228 76.3
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 3.7e-90 335.5 253 69.6
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 4.8e-90 335.1 200 81.5
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 4.8e-90 335.1 200 81.5
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 6.3e-90 334.7 198 82.3
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 6.3e-90 334.7 201 80.6
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 6.3e-90 334.7 211 80.6
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 6.3e-90 334.7 197 81.2
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 1.4e-89 333.6 211 77.3
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 2.4e-89 332.8 228 74.6
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 2.4e-89 332.8 227 75.3
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 2.4e-89 332.8 227 74.9
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 4.1e-89 332.0 197 81.7
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 5.3e-89 331.6 231 72.3
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 5.3e-89 331.6 201 81.1
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 9.1e-89 330.9 198 81.8
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.6e-88 330.1 222 74.3
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.6e-88 330.1 211 78.7
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 1.6e-88 330.1 201 79.1
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 3.5e-88 328.9 197 81.2
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 3.5e-88 328.9 201 78.6
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 3.5e-88 328.9 197 80.7
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 4.5e-88 328.6 201 77.1
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 4.5e-88 328.6 197 81.2
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 5.9e-88 328.2 196 81.1
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 5.9e-88 328.2 199 81.9
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 7.7e-88 327.8 223 74.9
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.3e-87 327.0 237 71.7
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 2.2e-87 326.2 227 72.7
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 3.8e-87 325.5 264 66.7
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 3.8e-87 325.5 228 72.8
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 5.0e-87 325.1 251 67.7
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 8.5e-87 324.3 190 83.7
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 1.9e-86 323.2 231 72.7
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 1.9e-86 323.2 198 77.3
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 3.2e-86 322.4 201 77.6
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 7.2e-86 321.2 225 72.4
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 2.1e-85 319.7 198 77.3
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 4.7e-85 318.5 196 78.6
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 4.7e-85 318.5 237 65.8
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 1.8e-84 316.6 228 71.5
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 2.3e-84 316.2 196 80.1
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 3.0e-84 315.8 200 76.5
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 5.2e-84 315.1 201 77.6
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 5.2e-84 315.1 201 75.1
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.2e-83 313.9 201 74.6
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.5e-83 313.5 197 78.2
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 4.4e-83 312.0 234 69.2
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 4.4e-83 312.0 234 69.2
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 5.7e-83 311.6 197 78.2
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 5.7e-83 311.6 220 73.2
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 7.5e-83 311.2 222 71.6
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 7.5e-83 311.2 214 72.0
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.3e-82 310.5 229 68.1
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 1.7e-82 310.1 196 73.5
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 1.7e-82 310.1 228 68.4
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 2.8e-82 309.3 234 68.8
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 8.2e-82 307.8 234 68.4
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 1.1e-81 307.4 234 68.4
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.1e-81 307.4 201 77.1
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 1.8e-81 306.6 196 75.0
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 2.7e-80 302.8 197 76.1
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 3.8e-79 298.9 193 79.8
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 4.2e-78 295.4 196 71.9
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 6.1e-77 291.6 197 74.6
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 1.3e-74 283.9 195 70.8
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 8.3e-74 281.2 158 96.8
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 1.2e-72 277.3 215 64.2
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 5.9e-72 275.0 194 67.5
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 2.9e-71 272.7 217 65.0
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 5.9e-64 248.4 195 61.5
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 4.3e-62 242.3 147 79.6
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 1.4e-57 227.3 160 73.1
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.4e-57 227.3 244 53.7
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 3.5e-56 222.6 133 82.7
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.5e-54 216.5 224 55.8
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 6.8e-52 208.4 167 66.5
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 3.7e-50 202.6 159 63.5
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 3.2e-49 199.5 188 52.7
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 8.1e-45 184.9 251 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 2.3e-44 183.3 145 59.3
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.7e-42 177.2 131 65.6
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 5.4e-41 172.2 183 46.4
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 7.8e-40 168.3 127 70.9
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.4e-36 157.5 112 68.8
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 2.4e-36 156.8 133 66.9
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 1.2e-35 154.5 95 75.8
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 4.6e-32 142.5 98 68.4
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 1.3e-31 141.0 191 41.9
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 2.3e-31 140.2 121 57.0
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.5e-30 137.5 136 47.8
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 9.6e-30 134.8 118 60.2
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 2.8e-29 133.3 187 39.6
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.4e-20 104.4 69 63.8
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 2.2e-18 97.1 86 61.6
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 2.1e-16 90.5 52 76.9
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 2.5e-14 83.6 51 76.5
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 4.8e-13 79.3 65 56.9
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.5e-11 74.3 60 58.3
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 9.9e-11 71.6 55 56.4
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.3e-10 71.2 51 62.7
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 4.6e-08 62.8 68 50.0
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 1.3e-07 61.2 43 72.1
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.1e-06 58.2 41 70.7


User provided reference genes

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