Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 3.7e-54 214.5 103 100.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.7e-54 214.5 103 100.0
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-53 212.6 103 99.0
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.4e-53 212.6 103 99.0
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.1e-53 211.1 103 98.1
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.9e-51 204.9 103 95.1
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.5e-42 175.3 101 83.2
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.1e-41 172.2 103 81.6
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 4.7e-41 171.0 103 80.6
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 8.0e-41 170.2 104 81.7
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 2.3e-40 168.7 101 77.2
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 4.0e-40 167.9 103 79.6
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.9e-40 166.8 101 80.2
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 8.9e-40 166.8 101 80.2
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.5e-39 166.0 103 80.6
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.5e-39 166.0 101 79.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 7.5e-39 163.7 103 75.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 7.5e-39 163.7 102 77.5
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.3e-38 162.9 103 73.8
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.3e-38 162.9 103 74.8
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.7e-38 162.5 103 77.7
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.7e-38 161.4 103 75.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 3.7e-38 161.4 103 72.8
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 4.9e-38 161.0 89 87.6
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 6.4e-38 160.6 103 72.8
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 6.4e-38 160.6 103 76.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 8.3e-38 160.2 99 79.8
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.1e-37 159.8 103 77.7
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.1e-37 159.8 103 75.7
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-37 159.8 104 75.0
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.1e-37 159.8 103 80.6
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.4e-37 158.7 103 75.7
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.2e-37 158.3 103 71.8
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.2e-37 158.3 103 74.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.1e-37 157.9 103 76.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 4.1e-37 157.9 103 71.8
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 5.4e-37 157.5 103 73.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.2e-36 156.4 104 74.0
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.2e-36 156.4 103 74.8
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.2e-36 156.4 103 73.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.6e-36 156.0 103 75.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.1e-36 155.6 103 69.9
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.7e-36 155.2 103 69.9
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 6.0e-36 154.1 103 74.8
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.0e-35 153.3 103 71.8
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.0e-35 153.3 103 71.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 3.9e-35 151.4 100 77.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 8.6e-35 150.2 104 72.1
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 8.6e-35 150.2 103 73.8
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.1e-34 149.8 103 73.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.1e-34 149.8 103 71.8
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.1e-34 149.8 103 70.9
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.5e-34 149.4 101 75.2
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.9e-34 149.1 98 69.4
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.9e-34 149.1 98 69.4
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.9e-34 149.1 98 76.5
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.9e-34 149.1 102 70.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.2e-33 146.4 131 58.0
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.6e-33 146.0 103 68.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.1e-33 145.6 100 75.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.1e-33 145.6 101 74.3
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.8e-33 145.2 103 73.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.8e-33 145.2 100 72.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 2.8e-33 145.2 103 70.9
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 3.6e-33 144.8 89 78.7
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.7e-33 144.4 101 73.3
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.7e-33 144.4 101 73.3
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 4.7e-33 144.4 95 71.6
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 6.2e-33 144.1 101 74.3
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 8.1e-33 143.7 103 74.8
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-32 143.3 97 70.1
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.4e-32 142.9 106 69.8
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.4e-32 142.9 99 72.7
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.8e-32 142.5 104 66.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 3.1e-32 141.7 103 64.1
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.1e-32 141.7 103 70.9
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 3.1e-32 141.7 101 68.3
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 4.0e-32 141.4 101 72.3
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 8.9e-32 140.2 103 67.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.2e-31 139.8 103 63.1
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.0e-31 139.0 99 70.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.6e-31 138.7 90 76.7
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.6e-31 138.7 107 69.2
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.2e-30 135.6 106 68.9
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.9e-30 135.2 104 68.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.9e-30 135.2 98 68.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.9e-30 135.2 98 68.4
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 6.4e-30 134.0 106 67.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-29 133.3 106 66.0
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.4e-29 132.9 106 68.9
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.4e-29 132.9 103 65.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.4e-29 132.1 106 66.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.4e-29 132.1 99 68.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.4e-29 132.1 102 67.6
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.1e-29 131.3 105 64.8
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 5.4e-29 131.0 104 65.4
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 7.1e-29 130.6 107 65.4
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.2e-28 129.8 104 65.4
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.2e-28 129.8 107 67.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.6e-28 129.4 89 73.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.6e-28 129.4 88 71.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.7e-28 128.6 103 64.1
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.7e-28 128.6 104 66.3
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.5e-28 128.3 89 73.0
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 4.6e-28 127.9 108 63.9
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 7.8e-28 127.1 103 65.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.3e-27 125.6 104 63.5
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 8.6e-27 123.6 106 65.1
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.1e-26 123.2 72 76.4
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 3.3e-26 121.7 88 69.3
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 3.3e-26 121.7 87 71.3
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.3e-26 121.3 104 62.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.6e-26 120.9 90 74.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 5.6e-26 120.9 89 67.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.1e-25 117.1 105 63.8
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 8.1e-25 117.1 105 63.8
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.4e-24 116.3 105 62.9
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.8e-24 115.9 89 66.3
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.4e-24 115.5 92 66.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 3.1e-24 115.2 91 65.9
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 3.1e-24 115.2 82 65.9
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 6.8e-24 114.0 91 64.8
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.5e-23 112.8 104 61.5
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 3.4e-23 111.7 91 63.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 1.7e-22 109.4 77 64.9
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.8e-22 108.2 84 59.5
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.9e-21 105.9 106 52.8
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.4e-21 105.5 91 61.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.1e-20 102.4 74 67.6
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 1.7e-19 99.4 74 71.6
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.9e-19 98.2 91 60.4
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.5e-18 95.5 69 65.2
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.1e-17 92.4 98 50.0
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.8e-17 91.3 74 70.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 8.1e-17 90.5 50 76.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.4e-15 84.7 76 63.2
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.3e-14 83.2 101 46.5
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 4.9e-14 81.3 99 47.5
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 8.4e-14 80.5 77 62.3
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.4e-13 77.8 75 57.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 7.1e-13 77.4 77 55.8
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 2.7e-12 75.5 53 62.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 7.8e-12 73.9 113 46.0
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 3.0e-11 72.0 70 48.6
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.1e-10 70.1 88 44.3
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.5e-10 69.7 76 56.6
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.1e-08 63.5 56 58.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 9.0e-08 60.5 35 71.4
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-07 59.7 52 63.5
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-07 59.7 52 63.5
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.0e-07 59.3 89 38.2


User provided reference genes

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