Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g18410 Fragaria vesca HOM05D046561 ORTHO05D000017 5.3e-130 467.6 223 100.0
FAN26G2836 Fragaria x ananassa HOM05D000007 ORTHO05D035403 1.3e-27 127.5 165 41.8
FvH4_1g19570 Fragaria vesca HOM05D000007 ORTHO05D045667 2.7e-17 93.2 173 37.0
FAN19G0863 Fragaria x ananassa HOM05D000007 ORTHO05D045667 2.7e-17 93.2 173 37.0
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 3.3e-15 86.3 170 35.9
FAN26G2435 Fragaria x ananassa HOM05D000007 ORTHO05D046541 7.4e-15 85.1 173 34.1
FAN26G3331 Fragaria x ananassa HOM05D000007 ORTHO05D046541 7.4e-15 85.1 173 34.1
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 9.6e-15 84.7 175 33.7
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-13 80.1 150 36.0
FvH4_3g14941 Fragaria vesca HOM05D000007 ORTHO05D000017 4.0e-13 79.3 157 34.4
FvH4_1g17550 Fragaria vesca HOM05D000007 ORTHO05D000017 6.9e-13 78.6 183 37.2
FAN16G3676 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.9e-13 78.6 152 35.5
PSO339G4553 Papaver somniferum HOM05D000007 ORTHO05D000017 1.2e-12 77.8 164 32.3
FAN25G0061 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.0e-11 74.7 154 34.4
FAN19G2319 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-11 74.3 171 36.3
FvH4_3g14940 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-11 73.9 155 35.5
PSO675G3468 Papaver somniferum HOM05D000007 ORTHO05D000017 2.9e-11 73.2 121 30.6
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 2.9e-11 73.2 158 32.9
THA.LOC104799786 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 3.8e-11 72.8 140 30.0
FvH4_3g14954 Fragaria vesca HOM05D000007 ORTHO05D000017 4.9e-11 72.4 172 33.7
RcHm_v2.0_Chr2g0086031 Rosa chinensis HOM05D000007 ORTHO05D013322 6.5e-11 72.0 165 32.1
PSO675G2314 Papaver somniferum HOM05D000007 ORTHO05D000017 8.4e-11 71.6 141 29.8
Lj3C973T7 Lonicera japonica HOM05D000007 ORTHO05D000017 1.1e-10 71.2 183 30.6
FvH4_3g01100 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-10 69.7 158 31.6
FvH4_3g14950 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-10 69.7 151 34.4
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-10 69.7 177 29.9
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 3.2e-10 69.7 177 29.9
THA.LOC104818785 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 3.2e-10 69.7 175 28.6
AT3G06240 Arabidopsis thaliana HOM05D000007 ORTHO05D000017 4.2e-10 69.3 203 26.1
FvH4_2g40801 Fragaria vesca HOM05D000007 ORTHO05D035269 5.5e-10 68.9 165 32.1
FAN11G2942 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.1e-10 68.6 151 33.8
FvH4_6g40090 Fragaria vesca HOM05D000007 ORTHO05D000017 9.3e-10 68.2 158 31.6
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-09 67.8 159 31.4
THA.LOC104818784 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 1.2e-09 67.8 143 29.4
FAN14G2810 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-09 67.4 158 31.0
FvH4_6g40000 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-09 67.0 151 27.8
AL3G17100 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 6.0e-09 65.5 197 26.9
PSO541G3012 Papaver somniferum HOM05D000007 ORTHO05D000017 6.0e-09 65.5 131 31.3
THA.LOC104818817 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 6.0e-09 65.5 143 29.4
THA.LOC104818818 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 7.9e-09 65.1 198 26.3
FvH4_2g36710 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-08 64.7 149 32.2
FAN03G2734 Fragaria x ananassa HOM05D000007 ORTHO05D013322 1.0e-08 64.7 171 33.9
QL04p068200 Quercus lobata HOM05D000007 ORTHO05D000017 1.0e-08 64.7 149 30.9
ECA232G4348 Erigeron canadensis HOM05D000007 ORTHO05D000017 1.3e-08 64.3 145 34.5
FvH4_2g33500 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-08 64.3 136 30.9
FvH4_6g15010 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-08 64.3 180 30.0
FAN24G1725 Fragaria x ananassa HOM05D000007 ORTHO05D046568 1.3e-08 64.3 136 30.9
Glyma.17G008200 Glycine max HOM05D000007 ORTHO05D000017 1.3e-08 64.3 172 25.6
FAN27G2044 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-08 63.9 147 31.3
THA.LOC104818816 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 1.8e-08 63.9 143 29.4
THA.LOC104820108 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 1.8e-08 63.9 165 26.7
TWI34G0359 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 1.8e-08 63.9 168 32.1
FAN15G1356 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.3e-08 63.5 136 33.1
Ah.13g070150 Amaranthus hybridus HOM05D000007 ORTHO05D000017 3.0e-08 63.2 134 32.1
CAN.G500.44 Capsicum annuum HOM05D000007 ORTHO05D000017 3.9e-08 62.8 158 31.6
FvH4_2g36711 Fragaria vesca HOM05D000007 ORTHO05D000017 3.9e-08 62.8 149 30.2
Gorai.004G022100 Gossypium raimondii HOM05D000007 ORTHO05D000017 3.9e-08 62.8 137 29.9
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 5.1e-08 62.4 172 29.1
HanXRQChr03g0066051 Helianthus annuus HOM05D000007 ORTHO05D000017 5.1e-08 62.4 153 31.4
Oeu030012.1 Olea europaea HOM05D000007 ORTHO05D000521 5.1e-08 62.4 139 30.2
Ciclev10012020m.g Citrus clementina HOM05D000007 ORTHO05D000017 6.7e-08 62.0 132 32.6
PSO063G3975 Papaver somniferum HOM05D000007 ORTHO05D000017 6.7e-08 62.0 124 31.5
PSO675G2381 Papaver somniferum HOM05D000007 ORTHO05D000017 6.7e-08 62.0 131 29.0
RcHm_v2.0_Chr2g0109111 Rosa chinensis HOM05D046561 ORTHO05D342860 6.7e-08 62.0 44 59.1
THA.LOC104818822 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 6.7e-08 62.0 140 30.7
BraA03t10045Z Brassica rapa HOM05D000007 ORTHO05D000017 8.7e-08 61.6 155 29.7
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.7e-08 61.6 172 28.5
FAN21G0670 Fragaria x ananassa HOM05D000870 ORTHO05D000715 8.7e-08 61.6 121 34.7
Aqoxy1G04047 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.1e-07 61.2 170 29.4
COL.COLO4_35009 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.1e-07 61.2 151 27.8
FAN28G0255 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-07 61.2 162 29.0
PSO528G0193 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-07 61.2 122 28.7
PGR004G1883 Punica granatum HOM05D000007 ORTHO05D000017 1.1e-07 61.2 128 32.0
Solyc09g091690.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.1e-07 61.2 160 30.6
Nitab4.5_0000059g0520 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.5e-07 60.8 143 32.9
THA.LOC104818815 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 1.5e-07 60.8 178 29.2
A03p07230 Brassica napus HOM05D000007 ORTHO05D000017 1.9e-07 60.5 155 31.0
PSO384G1648 Papaver somniferum HOM05D000007 ORTHO05D000017 1.9e-07 60.5 128 27.3
BcaB03g14663 Brassica carinata HOM05D000007 ORTHO05D000017 2.5e-07 60.1 126 30.2
Carub.0003s0567 Capsella rubella HOM05D000007 ORTHO05D000017 2.5e-07 60.1 203 25.6
FAN09G2242 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.5e-07 60.1 132 30.3
HanXRQChr15g0467301 Helianthus annuus HOM05D000007 ORTHO05D000039 2.5e-07 60.1 174 29.3
Nitab4.5_0000191g0130 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.5e-07 60.1 127 34.6
PSO832G1254 Papaver somniferum HOM05D000007 ORTHO05D000017 2.5e-07 60.1 124 31.5
Gohir.A09G060100 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.3e-07 59.7 161 28.0
Gorai.006G073900 Gossypium raimondii HOM05D000007 ORTHO05D000017 3.3e-07 59.7 163 28.2
Nitab4.5_0003546g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.3e-07 59.7 127 34.6
Peaxi162Scf00048g00192 Petunia axillaris HOM05D000007 ORTHO05D000017 3.3e-07 59.7 119 32.8
RcHm_v2.0_Chr2g0154531 Rosa chinensis HOM05D000007 ORTHO05D000017 3.3e-07 59.7 187 26.2
AUR62012552 Chenopodium quinoa HOM05D000007 ORTHO05D000017 4.3e-07 59.3 153 31.4
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-07 59.3 137 31.4
AUR62010298 Chenopodium quinoa HOM05D000007 ORTHO05D000017 5.7e-07 58.9 148 27.7
COL.COLO4_06123 Corchorus olitorius HOM05D000007 ORTHO05D000017 5.7e-07 58.9 146 31.5
Manes.05G124500 Manihot esculenta HOM05D000007 ORTHO05D000521 5.7e-07 58.9 143 32.2
RcHm_v2.0_Chr5g0075931 Rosa chinensis HOM05D000007 ORTHO05D000017 5.7e-07 58.9 165 29.7
Sopen09g034590 Solanum pennellii HOM05D000007 ORTHO05D000017 5.7e-07 58.9 160 30.0
AL7G42560 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 7.4e-07 58.5 188 27.7
CSS0029460 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 7.4e-07 58.5 162 29.6
CANSAT56G1440 Cannabis sativa HOM05D000007 ORTHO05D000017 7.4e-07 58.5 180 28.9
Medtr5g046290 Medicago truncatula HOM05D000007 ORTHO05D000017 7.4e-07 58.5 126 26.2
Medtr5g046300 Medicago truncatula HOM05D000007 ORTHO05D000017 7.4e-07 58.5 126 26.2
Nitab4.5_0003611g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000521 7.4e-07 58.5 156 24.4
Peaxi162Scf00047g00088 Petunia axillaris HOM05D000007 ORTHO05D000017 7.4e-07 58.5 166 30.1
RcHm_v2.0_Chr5g0076151 Rosa chinensis HOM05D000007 ORTHO05D000017 7.4e-07 58.5 193 23.8
THA.LOC104818824 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 7.4e-07 58.5 124 29.8
CARHR253610 Cardamine hirsuta HOM05D000007 ORTHO05D000017 9.6e-07 58.2 161 29.2
COL.COLO4_03689 Corchorus olitorius HOM05D002102 ORTHO05D004119 9.6e-07 58.2 153 27.5
Migut.I00496 Erythranthe guttata HOM05D000007 ORTHO05D000521 9.6e-07 58.2 180 27.2
Nitab4.5_0002398g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000017 9.6e-07 58.2 155 31.6
COL.COLO4_09297 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.3e-06 57.8 125 28.8
COL.COLO4_25854 Corchorus olitorius HOM05D000007 ORTHO05D000521 1.3e-06 57.8 172 26.7
FvH4_1g18470 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-06 57.8 168 25.6
Nitab4.5_0004124g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 1.3e-06 57.8 156 22.4
PSO407G0229 Papaver somniferum HOM05D000007 ORTHO05D000017 1.3e-06 57.8 134 30.6
PSO832G1301 Papaver somniferum HOM05D000007 ORTHO05D000017 1.3e-06 57.8 154 30.5
VMungo1383G2748 Vigna mungo HOM05D000007 ORTHO05D000017 1.3e-06 57.8 146 29.5
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 1.6e-06 57.4 130 29.2
BraA03t12634Z Brassica rapa HOM05D000007 ORTHO05D000017 1.6e-06 57.4 145 29.0
AUR62012803 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.6e-06 57.4 194 27.3
COL.COLO4_13989 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.6e-06 57.4 161 28.6
DCAR_030528 Daucus carota HOM05D002200 ORTHO05D002294 1.6e-06 57.4 130 28.5
FvH4_6g19961 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-06 57.4 162 29.0
QL04p065217 Quercus lobata HOM05D000007 ORTHO05D000017 1.6e-06 57.4 175 27.4
SalBow7G0422 Salvia bowleyana HOM05D000007 ORTHO05D000017 1.6e-06 57.4 116 31.0
Ah.14g085690 Amaranthus hybridus HOM05D000007 ORTHO05D000017 2.1e-06 57.0 163 30.7
A03p34570 Brassica napus HOM05D000007 ORTHO05D000017 2.1e-06 57.0 145 29.0
COL.COLO4_07287 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.1e-06 57.0 137 27.7
FAN25G0914 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-06 57.0 183 30.1
Oeu017867.1 Olea europaea HOM05D000007 ORTHO05D000521 2.1e-06 57.0 124 29.8
EL10Ac8g20564 Beta vulgaris HOM05D000007 ORTHO05D000017 2.8e-06 56.6 154 27.9
Oeu030025.1 Olea europaea HOM05D000007 ORTHO05D000521 2.8e-06 56.6 125 28.8
RcHm_v2.0_Chr2g0154611 Rosa chinensis HOM05D000007 ORTHO05D000017 2.8e-06 56.6 187 27.3
Sp3g05160 Schrenkiella parvula HOM05D000007 ORTHO05D000017 2.8e-06 56.6 148 27.7
THA.LOC104806333 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 2.8e-06 56.6 169 28.4
FAN26G1243 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-06 56.2 99 37.4
Medtr2g028160 Medicago truncatula HOM05D000007 ORTHO05D000017 3.7e-06 56.2 150 28.0
Medtr5g046280 Medicago truncatula HOM05D000007 ORTHO05D000017 3.7e-06 56.2 126 25.4
Nitab4.5_0007614g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.7e-06 56.2 151 27.2
QL05p069415 Quercus lobata HOM05D000007 ORTHO05D000017 3.7e-06 56.2 154 26.6
Ah.02g114440 Amaranthus hybridus HOM05D000169 ORTHO05D003054 4.8e-06 55.8 165 28.5
FAN05G3133 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.8e-06 55.8 129 27.1
THA.LOC104818813 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 4.8e-06 55.8 125 30.4
AUR62021850 Chenopodium quinoa HOM05D000007 ORTHO05D000017 6.3e-06 55.5 194 28.4
AUR62039091 Chenopodium quinoa HOM05D000007 ORTHO05D000017 6.3e-06 55.5 125 28.8
FAN26G1796 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.3e-06 55.5 160 28.1
RcHm_v2.0_Chr1g0344741 Rosa chinensis HOM05D000007 ORTHO05D000039 6.3e-06 55.5 127 29.1
THA.LOC104818825 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 6.3e-06 55.5 123 27.6
Ciclev10006809m.g Citrus clementina HOM05D000007 ORTHO05D000017 8.2e-06 55.1 171 28.1
COL.COLO4_14886 Corchorus olitorius HOM05D000007 ORTHO05D000017 8.2e-06 55.1 128 34.4
Nitab4.5_0011068g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 8.2e-06 55.1 149 24.8
QL08p001470 Quercus lobata HOM05D000007 ORTHO05D000017 8.2e-06 55.1 144 29.9
PGSC0003DMG400029632 Solanum tuberosum HOM05D000007 ORTHO05D000017 8.2e-06 55.1 162 29.6


User provided reference genes

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