Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 4.7e-99 365.2 285 100.0
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.7e-99 365.2 285 100.0
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.4e-98 363.6 285 99.3
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.3e-96 354.4 285 98.6
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 4.6e-86 322.0 289 93.8
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 7.3e-76 288.1 273 89.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.1e-75 286.6 247 99.2
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.8e-74 283.5 276 87.0
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 4.4e-73 278.9 265 90.2
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 4.4e-73 278.9 271 86.7
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 5.4e-71 271.9 266 88.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 3.9e-69 265.8 265 87.5
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.9e-69 265.8 264 87.9
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 6.6e-69 265.0 264 87.9
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.5e-68 263.8 252 91.7
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.5e-68 263.1 264 87.5
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.3e-68 262.7 264 87.5
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.3e-68 262.7 264 87.5
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 3.3e-68 262.7 264 86.7
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.3e-68 262.3 264 87.5
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.3e-68 261.5 266 88.3
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.3e-68 261.5 266 88.3
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 7.3e-68 261.5 263 86.3
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.6e-68 261.2 266 88.0
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-67 260.8 265 87.5
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.6e-67 260.4 252 89.3
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 8.1e-67 258.1 264 87.5
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.4e-66 257.3 265 77.4
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.4e-66 257.3 264 85.6
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.0e-66 255.8 266 86.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.2e-65 254.2 251 89.6
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 1.2e-65 254.2 271 82.7
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.6e-65 253.1 264 83.7
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.6e-65 253.1 264 84.8
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.7e-64 250.4 264 84.1
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.2e-64 250.0 253 84.2
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 2.9e-64 249.6 280 81.1
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.9e-64 248.8 264 84.1
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 4.9e-64 248.8 265 83.8
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 6.4e-64 248.4 248 87.5
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.1e-63 247.7 261 83.5
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.4e-63 246.5 262 84.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.4e-63 246.5 262 84.0
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.4e-63 246.5 264 82.6
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.2e-63 246.1 262 84.0
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.2e-63 245.7 264 83.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.2e-63 245.7 264 83.3
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 4.2e-63 245.7 271 82.7
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 5.4e-63 245.4 250 87.2
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 5.4e-63 245.4 265 83.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 5.4e-63 245.4 265 83.4
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 9.3e-63 244.6 262 83.6
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.2e-62 244.2 264 81.1
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.2e-62 244.2 264 81.1
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.2e-62 244.2 265 84.2
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.6e-62 243.8 264 80.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.5e-62 242.7 265 83.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 4.6e-62 242.3 262 82.8
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 7.9e-62 241.5 272 80.9
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.3e-61 240.0 264 79.5
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.3e-61 240.0 264 79.5
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.1e-60 237.7 252 83.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.9e-60 236.9 266 82.0
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 4.3e-60 235.7 267 82.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 4.3e-60 235.7 264 81.4
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 4.3e-60 235.7 262 81.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 5.6e-60 235.3 263 76.4
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 9.6e-60 234.6 267 81.3
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.6e-59 233.8 270 79.6
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.6e-59 233.8 264 76.5
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 2.1e-59 233.4 263 78.3
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.1e-59 233.4 278 78.8
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.8e-59 233.0 267 79.4
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.8e-59 233.0 250 84.8
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 4.8e-59 232.3 262 80.2
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.8e-59 232.3 271 78.6
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.1e-58 231.1 264 81.1
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 1.8e-58 230.3 281 76.5
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.4e-58 229.9 264 81.4
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 2.4e-58 229.9 264 80.7
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 3.1e-58 229.6 262 78.6
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 4.0e-58 229.2 268 79.1
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 6.9e-58 228.4 261 80.1
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 9.0e-58 228.0 264 80.3
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 9.0e-58 228.0 268 79.1
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.5e-57 227.3 264 79.5
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 2.0e-57 226.9 265 78.9
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.6e-57 226.5 268 78.7
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.6e-57 226.5 273 78.0
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 2.6e-57 226.5 265 78.1
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 5.8e-57 225.3 264 79.9
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.8e-57 225.3 271 77.5
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 7.6e-57 224.9 264 79.9
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 7.6e-57 224.9 264 79.9
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.3e-56 224.2 268 79.9
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.3e-56 224.2 264 79.5
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.7e-56 223.8 275 77.1
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.7e-56 223.8 243 85.6
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.2e-56 223.4 283 76.0
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 2.2e-56 223.4 275 77.1
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 3.8e-56 222.6 268 79.5
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 3.8e-56 222.6 268 79.5
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 3.8e-56 222.6 268 79.5
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 3.8e-56 222.6 268 79.5
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.9e-56 222.2 275 53.5
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 8.4e-56 221.5 268 77.6
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 8.4e-56 221.5 256 81.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.5e-55 218.8 254 81.1
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 7.1e-55 218.4 250 81.2
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 7.1e-55 218.4 265 77.4
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 7.1e-55 218.4 252 81.0
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 7.1e-55 218.4 230 90.9
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.2e-54 217.6 250 82.4
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 3.5e-54 216.1 264 77.7
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.3e-53 214.2 265 78.1
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.3e-53 214.2 263 78.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.8e-53 213.8 226 88.9
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.1e-53 212.2 267 77.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 6.7e-53 211.8 266 76.3
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 1.1e-52 211.1 279 73.5
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.5e-52 210.7 271 76.0
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.5e-52 209.9 252 80.6
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.3e-52 209.5 256 80.5
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 7.4e-52 208.4 269 75.8
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 4.0e-50 202.6 272 74.6
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 6.9e-50 201.8 220 90.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.5e-49 200.7 215 90.7
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.8e-49 198.7 275 45.1
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 7.6e-49 198.4 266 75.2
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-48 197.6 226 86.3
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.3e-48 197.6 229 85.6
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.7e-48 197.2 269 71.0
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 6.5e-48 195.3 259 71.4
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 5.5e-47 192.2 252 76.6
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.6e-46 190.7 261 72.8
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 4.6e-46 189.1 264 75.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 6.0e-46 188.7 249 69.9
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.8e-45 187.2 262 72.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 4.5e-41 172.6 264 58.3
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 2.9e-40 169.9 213 85.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 3.8e-40 169.5 250 70.8
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-38 162.9 243 75.3
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 4.1e-34 149.4 203 83.7
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.1e-34 149.4 94 76.6
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.9e-34 148.7 83 86.7
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 4.7e-30 136.0 212 78.8
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.0e-29 133.3 85 77.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.0e-29 133.3 93 69.9
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 3.9e-29 132.9 265 56.2
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 6.3e-27 125.6 269 63.6
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.6e-25 120.2 256 64.5
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.2e-23 112.8 80 65.0
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.2e-22 111.3 86 69.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 5.2e-21 105.9 253 57.7
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.5e-20 104.4 74 67.6
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.7e-14 83.6 53 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 3.5e-09 66.6 249 57.0
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.9e-07 60.8 116 37.9
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 9.4e-07 58.5 50 54.0
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 2.1e-06 57.4 80 40.0
Medtr4g092530 Medicago truncatula HOM05D000094 ORTHO05D001056 2.7e-06 57.0 85 38.8
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 3.6e-06 56.6 93 32.3
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 3.6e-06 56.6 112 36.6
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 4.7e-06 56.2 63 54.0
PGSC0003DMG400022632 Solanum tuberosum HOM05D000094 ORTHO05D002904 4.7e-06 56.2 97 38.1
VMungo0331G1233 Vigna mungo HOM05D000094 ORTHO05D001056 6.1e-06 55.8 102 34.3


User provided reference genes

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